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2794 discussions

Updated YNIC ethics forms
by Fiona McNab 18 Oct '21

18 Oct '21

Dear All, Daniel K, Andre and I (mostly Daniel K!) have updated three of the YNIC ethics documents: the guidance, the project proposal form (needed for first-time users of YNIC facilities and external applicants) and the ethics application form. Joe has put them on the website: https://www.york.ac.uk/psychology/research/york-neuroimaging-centre/facilit… and they are attached here too. If you've started an old version and would prefer to continue with it, no problem! If there are any problems, please let me know. Best wishes, Fiona

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YNiC open-plan access, operator training
by Richard Aveyard 15 Oct '21

15 Oct '21

Hi Everyone, *A number of desks in YNiC open-plan are now available for general use* on a first come first serve basis without reservation. Some desks have been allocated to individuals, so please only use those labelled as available for general use.* Open-plan will not be available for general use on Mondays* due to the requirement to retain a COVID-safe environment while running a clinical service. Our next scheduled level 0 training session on the 27th of October is fully subscribed, so *the next available level 0 training will be held on Tuesday the 9th of November 10:00-12:00*. Please note that users requesting Level 0 training should be a PhD, RA/Postdoc, or staff, and should already have a project proposal submitted to YNiC. All users that wish to be operator trained must have First Aid training. Please ensure that this has been completed, or is booked in, before contacting us to arrange training. Email support(a)ynic.york.ac.uk if you have any questions or wish to book on to this session. Please note that places are limited and are allocated on a first-come first-served basis. Training must be booked at least a week before the session date, in order to reserve the scanner booking. Cheers, Rich -- Dr Richard Aveyard Senior Research Technician York NeuroImaging Centre University of York, UK

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YNiC Remote Desktop access from Psychology
by Joe Lyons 06 Oct '21

06 Oct '21

Hello There is currently a bug in the version of x2go installed on the Psychology managed desktops which means you won't be able to suspend and resume sessions on the YNiC Remote Desktops. We're working on getting the correct version rolled out to these machines but in the mean time, you'll need to logout each time you want to disconnect. We'll let you know when the working version is installed. Thanks Joe -- Thanks Joe Lyons, UNIX Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)ynic.york.ac.uk - 01904 435343

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Fwd: Postdoc Ad (Takemura Lab, Okazaki, Japan)
by Antony Morland 21 Sep '21

21 Sep '21

Hello All, This looks like a great opportunity. Best wishes Tony ---------- Forwarded message --------- From: Hiromasa TAKEMURA <htakemur(a)nips.ac.jp> Date: Tue, 21 Sept 2021 at 00:52 Subject: Postdoc Ad (Takemura Lab, Okazaki, Japan) To: Brian A Wandell <wandell(a)stanford.edu>, <jlg(a)stanford.edu>, < kalanit(a)stanford.edu>, Jonathan A Winawer <jonathan.winawer(a)nyu.edu>, Noah Benson <nben(a)uw.edu>, Dora Hermes <dorahermes(a)gmail.com>, Kendrick Kay < kendrick.kay(a)gmail.com>, Aviv Mezer <aviv.mezer(a)elsc.huji.ac.il>, Franco Pestilli <pestilli(a)utexas.edu>, Ariel Rokem <arokem(a)uw.edu>, Kevin Sean Weiner PhD <kweiner(a)berkeley.edu>, <jessegomez(a)princeton.edu>, Serge Dumoulin <s.dumoulin(a)spinozacentre.nl>, Jason Yeatman <jdyeatman(a)gmail.com>, netta Levin <Nettalevin(a)gmail.com>, Michal Ben-Shachar < michal.benshachar(a)gmail.com>, Vaidehi Subhash Natu <vnatu(a)stanford.edu>, Antony Morland <antony.morland(a)york.ac.uk>, Stephen Engel <engel(a)umn.edu>, Alex Wade <wade(a)wadelab.net> Dear all, I hope that this email finds you well. I just started my own lab on September 1st. The institute helped me to find a very good lab manager, who has already helped me a lot. Things went smoothly at this point. The next step is to find scientists, which can be the most difficult part. I have no ideas on what would be a good strategy to find a good postdoc, and I expect that I will have a very hard time finding good candidates. Nevertheless, I am looking for one postdoc and have started an open call for a postdoc position. I'm now trying to distribute the ad as much as I can. If you kindly distribute the following ad for those who have potential interest, I will greatly appreciate it. Best, Hiromasa ---start of the ad--- Dear All, The Takemura Lab (https://www.nips.ac.jp/scbm/en/) at National Institute for Physiological Sciences (Okazaki, Japan) is seeking to hire a postdoctoral fellow, who will work on one of the following topics: (i) human neuroimaging study on white matter tracts, or comparative studies on white matter tracts using diffusion MRI, (ii) high-resolution structural and/or functional brain mapping using 7T MRI system, and (iii) cognitive neuroscience studies on sensory or language processing in the human brain. The prior experience on neuroimaging studies is advantageous but not required. Candidates are expected to be experienced with coding in either MATLAB or Python. Candidates must have a Ph.D. or be scheduled to complete the degree until the starting date. The National Institute of Physiological Sciences is located in a city named Okazaki, which is renowned for beautiful cherry blossoms along a clean river and the Okazaki castle. The institute houses a 7T and 3T MRI system fully dedicated for research. Takemura Lab houses a setup for visual psychophysics experiments. For details, please visit a following website: https://www.nips.ac.jp/scbm/en/recruit/2021/09/1224.html If you have any questions, please send an email to Hiromasa Takemura ( htakemur(a)nips.ac.jp). Hiromasa Takemura -- Hiromasa, TAKEMURA, Ph.D. 1) Professor, Division of Sensory and Cognitive Brain Mapping, Department of System Neuroscience, National Institute for Physiological Sciences 2) Professor, Department of Physiological Sciences, School of Life Sciences, SOKENDAI (The Graduate University for Advanced Studies) 3) Senior Researcher, Brain function analysis and imaging laboratory, Center for Information and Neural Networks (CiNet), Advanced ICT Research Institute, National Institute of Information and Communications Technology 4) Guest Associate Professor, Graduate School of Frontier Biosciences, Osaka University 38 Nishigonaka, Myodaiji, Okazaki, Aichi, 444-8585 Japan e-mail: htakemur(a)nips.ac.jp Lab web page: https://www.nips.ac.jp/scbm/en/ --- End of the Ad --- -- Antony Morland, PhD. Theme Lead - Neuroscience, York Biomedical Research Institute Department of Psychology, University of York, York YO10 5DD, UK.

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YNiC closures, IT disruption, and operator training
by Richard Aveyard 07 Sep '21

07 Sep '21

Dear YNiC users, *YNiC will be closed to users for the week commencing the 6th of September for vital maintenance*. This will include disruption to YNiC computing resources for at least the 6th and 7th. *No operator cover will be available for the week commencing the 20th of September*, however, researcher's can use the facilities by providing their own operators in this period. For the entire of September, YNiC staff availability will be limited, so signatures for conditional exceptions on consent forms should be requested a week ahead of the scan booking. We are holding *level 0 operator training on Wednesday the 25th of August at 13:00 *and we have space for 2 more trainees.L0 training is available to allow researcher's to run their own MRI sessions with reduced reliance on YNiC operators. This training should only be undertaken by researcher's who have projects that will require operators imminently. If anybody wants to attend this L0 training please contact support(a)ynic.york.ac.uk Cheers, Rich -- Dr Richard Aveyard Senior Research Technician York NeuroImaging Centre University of York, UK

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Goodbye old friend : GE MRI
by Andre Gouws 30 Jul '21

30 Jul '21

Dear GE Signa Excite 3T MRI You did your last shift for us this afternoon. At least 3100 research participants have had a lie down inside you (some of those nearly 200 times like me) and your relaxing purr has sent many of them to sleep when they were supposed to be doing our experiments. You have launched many careers, and probably ended a couple too. Thank you for 17 years of solid service and all the memories - although we may not miss the recurring routine 4am callouts when your humidity sensors went nuts every summer. And like most 17year olds, you're now going to head off on a world tour (probably India). We'll miss you. -- André ************************************************************************ André Gouws PhD CQC Registered Manager Operations Manager York Neuroimaging Centre and York Diagnostic Imaging University of York The Biocentre York Science Park Heslington YO10 5NY Tel: +44 (0) 1904 435327 Fax: +44 (0) 1904 435356

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Post-doc opportunity at Oxford
by Joe Lyons 19 Jul '21

19 Jul '21

(Apologies if you have already received this through Psychology) *Postdoctoral Research Fellow* Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, Oxford Grade 7: £32,817 - £40,322 per annum. (A less experienced candidate may be appointed at Grade 6 (£29,176 - £34,804 p.a.) with a commensurate adjustment in essential criteria, responsibilities and duties) We are seeking a postdoctoral research fellow to join a 4-year MRC-funded research programme led by Dr Betina Ip and Professor Holly Bridge, based at the Wellcome Integrative Neuroimaging (WIN) Centre, part of the Nuffield Department of Clinical Neurosciences at the University of Oxford. The role will investigate the neural mechanisms underlying binocular vision plasticity. The successful candidate will conduct research to evaluate the potential of the binocular visual system to reorganise in the normal and abnormal visual system using a combination of complementary approaches. Alongside the focus the project has on neurochemical measures measured with magnetic resonance spectroscopy, the postholder will also employ visual perceptual learning, pharmacological manipulation, models of binocular vision abnormality and multimodal MRI (MRS, MRI, DTI, RSN). They will design and perform original research within this programme and bring to this position relevant expertise in behavioural psychophysics and/or non-invasive brain imaging. It is essential that the postholder hold, or be nearing to completion of, a PhD or DPhil in Neuroscience or other relevant discipline and an interest in the visual system, plasticity and neuroimaging. It is also vital that they have relevant experience in conducting neuroimaging and/or behavioural research to develop and test novel hypotheses. It would be beneficial if the successful applicant has knowledge and experience of conducting perceptual training and neuroplasticity studies. It would also be of benefit to the role if they have an interest in increasing accessibility to neuroscience through both engagement with the public and broadening access to scientific careers. The post is full-time for a fixed-term until 31st July 2025 in the first instance. Only applications received before 12.00 midday on 12th August 2021 will be considered. Interviews will be held as soon as possible thereafter. Contact Person: Recruitment Team Vacancy ID: 152175 Closing Date & Time: 12-Aug-2021 12:00 Contact Email: recruitment(a)ndcn.ox.ac.uk -- Thanks Joe Lyons, UNIX Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)ynic.york.ac.uk - 01904 435343

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Managing COVID risk at YNiC from July 19th
by Rebecca Lowndes 15 Jul '21

15 Jul '21

Hello all, With the Government removing legal restrictions on Monday, we thought we would clarify our position on COVID policies and procedures for the foreseeable future. *Mask wearing* As Charlie Jefferies outlined in his 'Our journey out of lockdown' email, consideration for our colleagues is the most important thing. Some of your colleagues may be keen to return to 'normal', whilst others may be anxious about the easing of restrictions. We strongly encourage you to continue wearing a mask wherever possible around the building and in common areas at YNiC. For operators of all modalities, please be aware that mask wearing is still *mandatory *whilst dealing with participants and in the entire research corridor. This is alongside the PPE we have been wearing for this last year. Please make your participants aware, particularly now, that refusal to wear a mask in the building is a *contraindication* to participation in your study, just like a pacemaker or metallic implants would be. *Access to YNiC* Those who have assigned desks at YNiC can continue to come in as usual. If you have been working remotely, and need to come in for a specific reason (ie to test a stimuli script, analysis that cannot be done on remote access etc), can request to do this through support(a)ynic.york.ac.uk . You will be asked to come in through reception, and have your temperature taken, before coming in to open plan. *Master's Students* We understand that this has been a frustrating year for students and that they have missed out on the opportunity to collaborate and work in YNiC as the cohorts before them did. We have allocated a group workspace in a section of open plan which can be booked for four hour slots from Tuesday to Friday. Please email support(a)ynic.york.ac.uk to book a slot. *Moving Forward* We understand that this is a frustrating and difficult time, and that many of you will have wanted us to remove more COVID procedures, whilst others would want us to be more strict. We hope this clarifies what our position is for now, as we look towards a more 'normal' future. Best wishes Becky -- Rebecca Lowndes Research Technician York Neuroimaging Centre

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Sending General Consent form to YNiC
by Joe Lyons 17 Jun '21

17 Jun '21

Hello We've put together a new system to allow participants to upload their General Consent forms directly to us over the Internet. We hope this will provide an easier and more secure way for you to get participants registered. I've attached 2 documents, one which includes details for the Project Investigator (/YNiC Upload System Instructions.pdf/) and one you can send to the participant (/YNIC_Document_Upload_Guide_for_participants//.pdf/) with instructions on how to upload their form. We do specify that you need to print out the General Consent form so it can be completed by hand and signed. We realise that not everyone has a printer at home and so it can be tricky to obtain a printed out copy. *_Online PDF Editors_* We're looking at a better way to get the form completed online without the need to print. Online PDF editors must **not** be used. Most require you to upload the form to be completed, potentially leaving a signed consent form full of personal details with an unknown third party. Some software packages like *Adobe Acrobat Reader* allow you to fill in and sign the form then export it as a pdf. University students/staff should have access to this on the VDS (Virtual Desktop Service). There is also a mobile/tablet version called *Adobe Fill & Sign* which also allows you to fill in and sign the form. Please do **not** use Microsoft Word as it will mess up the formatting. As before, you can still bring the form into YNiC or send it in the post and the form should reach us 24 hours before the session. If you have any questions, please email support(a)ynic.york.ac.uk. Thanks Joe -- Thanks Joe Lyons, York Neuroimaging Centre (YNiC), University of York joe.lyons(a)ynic.york.ac.uk - 01904 435343

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Some updates from YNiC
by Andre Gouws 08 Jun '21

08 Jun '21

Hi all, Its been great seeing so many of you at the centre again - we look forward to seeing more of you soon! On that note: *Access to YNIC* We are all at the mercy of the government and university review of restrictions and with increasing case numbers the guidance given to us is going to come relatively slowly (I expect). So please bear with us. For now, access to the centre remains restricted to those who have an allocated workspace here and investigators who are attending for scanning. *You sharing information with us - securely* We have a new system in place where you can share confidential docs with us via a secure upload site (e.g. your participant could take a photo of their registration form and upload it directly to us from their phone). Please see the follow up email from Joe Lyons later this week. *Us sharing information with you - securely* If you require participant information, please email us at support(a)ynic.york.ac.uk and leave us a phone number to call you back on - we will call you as soon as we can. Hope to see you all soon The team @ YNiC -- André ************************************************************************ *André Gouws PhD* *Operations Manager * *CQC Registered Manager* *York Neuroimaging Centre and York Diagnostic Imaging* *University of York* *The Biocentre* *York Science Park* *Heslington* *YO10 5NY* *Tel: +44 (0) 1904 435327* *Fax: +44 (0) 1904 435356 *

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