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YNiC seminar tomorrow, 1pm.
by Jennifer Ashton 06 Feb '24

06 Feb '24

Hi Everyone, We have our YNiC seminar series starting again tomorrow at 1pm. *Dr Richard Aveyard *will be presenting an introduction to the Brain Imaging Data Structure (BIDS)*.* *The Brain Imaging Data Structure (BIDS) is becoming the standard format for organizing and sharing neuroimaging data. It has been adopted by a large number of research groups for internal use, as well as the OpenNeuro, SchizConnect, Developing Human Connectome Project, and FCP-INDI databases. This seminar will give a beginner's introduction to BIDS, and how it can be combined with containerized computing.* We really hope to see everyone at YNiC! If you are unable to attend the talk in person, you can catch it on zoom using the following link: https://york-ac-uk.zoom.us/j/96762553290?pwd=UEluT1lMd3V5azY5YzNmWkJCV1VTdz… <https://www.google.com/url?q=https://york-ac-uk.zoom.us/j/96762553290?pwd%3…> . We look forward to seeing you tomorrow! Many thanks, Jennifer -- Jennifer Ashton, PhD Senior Research Technician York Neuroimaging Centre Working days: Monday, Tuesday and Wednesday

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This Week at YNiC
by Jennifer Ashton 31 Jan '24

31 Jan '24

Hello, Please find details below about our IT survey, new wiki, training and upcoming seminar. *YNiC Computing Facilities Survey!!* If you haven't already completed our IT survey, we would really appreciate 2 minutes of your time to give us some feedback. Here is the link to the survey: https://forms.gle/JN3GnZKXonVmWGWz6. *New YNiC Wiki* Here is the link to our new YNiC wiki (https://wiki.pages.ynic.york.ac.uk/). You will find useful guides to setting up projects, collecting data, and completing your analysis. Please get in touch if there is other information that would be useful for us to add (contact us at support(a)ynic.york.ac.uk). *YNiC User Inductions* If you are aware of any new students/staff that will require access to YNiC and/or an IT account, they must attend a YNiC user induction. Our next induction will be on *Thursday the 8th of February at 10:00*. Please ask them to contact support(a)ynic.york.ac.uk to sign up. *Level 0 operator training* *The next L0 training session will be held on Thursday the 15th of February, 13:00-15:00. * Please note that users requesting Level 0 training should be a PhD, RA/Postdoc, or staff, and should already have a project proposal submitted to YNiC. Please email support(a)ynic.york.ac.uk if you have any questions or wish to book on to this session. Please note that sessions are limited to 4 trainees, which will be allocated on a first-come first-served basis. Training must be booked at least a week before the session date, in order to reserve the scanner booking. *Seminar* We will have our first YNiC seminar of the year next *Wednesday the 7th of February at 13:00. Dr Richard Aveyard *will be giving us an introduction to BIDS (Brain Imaging Data Structure) and telling us how it can be used at YNiC. Both staff and students are encouraged to come over to YNiC to attend these seminars. We look forward to seeing many of you there! Have a great week! Many thanks, Jennifer -- Jennifer Ashton, PhD Senior Research Technician York Neuroimaging Centre Working days: Monday, Tuesday and Wednesday

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YNiC Computing Facilities Survey and wiki
by Joe Lyons 26 Jan '24

26 Jan '24

Hello I'm sending out the *YNiC Computing Facilities Survey* again as some people said they didn't receive it. It would be good to get some more responses about how you currently use YNiC's computing facilities. So apologies if you're seeing this again. https://forms.gle/JN3GnZKXonVmWGWz6 I'd also like to promote the new YNiC wiki we have setup. It's available here, https://wiki.pages.ynic.york.ac.uk/ and hopefully is a bit easier to navigate and find things. The old one is mostly out of date and will be decommissioned soon. Thanks Joe -- Thanks Joe Lyons, Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)york.ac.uk 01904 325949 | 01904 325940

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Fwd: Human brain anatomy courses
by YNiC Reception 16 Jan '24

16 Jan '24

** *HUMAN BRAIN ANATOMY COURSE (2-day, **in-person**) * *3-4 February 2024, King’s College London, UK * *Highly popular and engaging introduction to human brain anatomy * £395, includes lectures, neuroanatomy practicals + online preparatory modules Participant feedback: *4.9 / 5.0* *More information / register now <https://www.neurocourses.com/attendance-courses/human-brain-anatomy-course-…>* ** *ONLINE** HUMAN BRAIN ANATOMY COURSE (60-day access) * *Flexible online access to 22 high-quality neuroanatomy lectures/videos * *Comprehensive overview of structural and functional brain anatomy * £395, includes 220 self-test MCQs, completion certificate + 72 CPD/CME points Participant feedback: *4.9 / 5.0* *More information / get instant access <https://www.neurocourses.com/online-course/#HBAC>*** ************************************************************************************** ****************************** This message may contain confidential information. If you are not the intended recipient please: i) inform the sender that you have received the message in error before deleting it; and ii) do not disclose, copy or distribute information in this e-mail or take any action in relation to its content (to do so is strictly prohibited and may be unlawful). Thank you for your co-operation. NHSmail is the secure email, collaboration and directory service available for all NHS staff in England. NHSmail is approved for exchanging patient data and other sensitive information with NHSmail and other accredited email services. For more information and to find out how you can switch visit Joining NHSmail – NHSmail Support <https://support.nhs.net/article-categories/joining-nhsmail/>

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Issues with YNiC Remote Desktops
by Joe Lyons 10 Jan '24

10 Jan '24

Hello After an systems upgrade yesterday, we're seeing issues with the Remote Desktop session handler. As a workaround, we've added a guide to the wiki on how to login each remote desktop directly https://wiki.pages.ynic.york.ac.uk/IT/RemoteDesktop/SetUp.html We're also still having issues with our support email which we hope to have resolved soon. Thanks Joe Joe Lyons, Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)york.ac.uk 01904 325949 | 01904 325940

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Issues sending emails to YNiC support/reception
by Joe Lyons 19 Dec '23

19 Dec '23

Dear All, Due to some changes recently with our mail servers and the central firewalls, we are currently unable to receive emails at the @ynic.york.ac.uk domain. This affects our support and rec-submissions email accounts. For ethics submissions and general support, please email richard.aveyard(a)york.ac.uk For IT support, please email Joe at joe.lyons(a)york.ac.uk If you have tried to contact us since 5pm yesterday (18/12/2023), please resend the message to one of the accounts above. Apologies for the inconvenience, we are working with central IT to resolve this issue as quickly as possible. Thanks YNiC Support -- Thanks Joe Lyons, Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)york.ac.uk 01904 325949 | 01904 325940

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YNiC email outage
by Richard Aveyard 19 Dec '23

19 Dec '23

Dear All, Due to issues with the University firewalls, we are currently unable to receive emails at the @ynic.york.ac.uk domain. This affects our support and rec-submissions email accounts. For ethics submissions and general support, please email me directly at richard.aveyard(a)york.ac.uk For IT support, please email Joe at joe.lyons(a)york.ac.uk *If you have tried to contact us since 5pm yesterday (18/12/2023), please resend the message to one of the accounts above.* Apologies for the inconvenience, we are working with central IT to resolve this issue as quickly as possible. Cheers Rich -- Dr Richard Aveyard Senior Technical Specialist York NeuroImaging Centre University of York, UK

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YNiC availability over the Christmas period
by Richard Aveyard 13 Dec '23

13 Dec '23

Hi All, The neuroimagoing centre will be closed to researchers between Wednesday the 20th of December, and Monday the 1st of December, inclusive. IT work will be taking place on the 20th of December, so access to YNiC IT systems (including the remote desktops) will be unavailable that day, but should be available otherwise. Due to limited staff availability, there will be no operator cover provided 2nd - 5th of January, inclusive, but the centre will be open for researchers to use the open-plan computing facilities and to run their own scans. Please get in touch if you anticipate this causing acute problems. Cheers, Rich -- Dr Richard Aveyard Senior Technical Specialist York NeuroImaging Centre University of York, UK

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YNiC: Call for Speakers
by Jennifer Ashton 13 Dec '23

13 Dec '23

Hello, We're looking for speakers for our YNiC seminar next semester. Everybody is welcome to present, and presentations can include previously collected data, new data, pilot data, study plans/ideas, discussions about theoretical/technical advances or anything else you think others would be interested in. These usually take place on Wednesdays at 4pm (but we can be flexible if this time doesn't suit you). If you don't currently use YNiC, but would like to, this would be a great opportunity to discuss your area of research and gain inspiration for future neuroimaging endeavours. If you are interested, please get in touch! Many thanks, Jennifer -- Jennifer Ashton, PhD Senior Research Technician York Neuroimaging Centre Working days: Monday, Tuesday and Wednesday

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Cogs *11am Friday* - Beth Jefferies - Spiral Waves in the Brain
by Tom Hartley 07 Dec '23

07 Dec '23

Hi everyone, This is a reminder that this week (*Friday 11am, YNiC, note the unusual time*) we have our third "Cogs" meeting. Beth Jefferies who will be leading a session on Spiral Waves in the Brain <https://uniofyork.padlet.org/tomhartley/cogs-7svj1mgvsc2jq2yp/wish/27644691…> . Cogs meetings are a new format that is designed to generate informal and lively discussion about topics that excite and inspire us. It's open to undergrads, academics, masters students, postdocs, research staff, PhD students, YNiC staff and basically anyone with an interest in cognitive neuroscience at the University of York. *discussion board: * *https://cogs.ynic.york.ac.uk/ <https://cogs.ynic.york.ac.uk/>* *email the organizers (Tom Hartley, Beth Jefferies) by email at cogs(a)ynic.york.ac.uk <cogs(a)ynic.york.ac.uk>*. See you all at Cogs! Tom ============ Dr Tom Hartley (Senior Lecturer) Dept. of Psychology, University of York, Heslington, York, YO10 5DD, UK +44 1904 322903 https://www-users.york.ac.uk/~th512 <http://www-users.york.ac.uk/~th512> https://www.york.ac.uk/psychology/staff/faculty/th512/ <http://www.york.ac.uk/psychology/staff/faculty/th512/>

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