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YNiC IT downtime this week, 5-6th September
by Richard Aveyard 02 Sep '24

02 Sep '24

Hello, Just a reminder, we will be taking the YNiC IT systems offline on *Thursday the 5th and Friday the 6th of September *to perform essential security updates. *This will affect all YNiC IT services including the remote desktops and the cluster, and no scanning will be available during this period. * Cheers, Rich -- Dr Richard Aveyard Senior Technical Specialist York NeuroImaging Centre University of York, UK

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MEG-UKI meeting 28-31st October, registration open
by Richard Aveyard 29 Aug '24

29 Aug '24

Hi All, This would be a great conference for anyone anticipating using our new OPM-MEG system, see details below. Cheers, Rich MEG-UKI provides a platform for researchers exploring hardware development, analysis methods, cognitive neuroscience and clinical translation to come together and discuss their research into Magnetoencephalography. The Centre for Human Brain Health at the University of Birmingham is hosting a series of meetings covering a broad range of topics in MEG research. We hope that hosting these in close proximity will provide opportunity for broad interdisciplinary conversations as well as saving on participant time, travel expenses and logistics. https://uobevents.eventsair.com/meguki/ -- Dr Richard Aveyard Senior Technical Specialist York NeuroImaging Centre University of York, UK

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YNiC IT downtime 5-6th September
by Richard Aveyard 21 Aug '24

21 Aug '24

Hello, We will be taking the YNiC IT systems offline on *Thursday the 5th and Friday the 6th of September *to perform essential security updates. *This will affect all YNiC IT services including the remote desktops and the cluster, and no scanning will be available during this period. * Please get in touch if you anticipate this causing undue disruption. Cheers, Rich -- Dr Richard Aveyard Senior Technical Specialist York NeuroImaging Centre University of York, UK

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YNiC Seminar Reminder
by Jennifer Ashton 05 Jun '24

05 Jun '24

Hello, Just to remind everyone that we have our final seminar of the academic year this afternoon* at 2pm. Dr Clara Humpston* will be presenting a talk titled* “Structural and functional neural correlates of anomalous self-experiences in a nonclinical sample”*. Please join us at YNiC to listen to the talk in Open Plan, or catch it on zoom using the following link: https://york-ac-uk.zoom.us/j/95197496363?pwd=G3YGIcV0u6EGQ70tby9N3harnDO7b6… <https://www.google.com/url?q=https://york-ac-uk.zoom.us/j/95197496363?pwd%3…> Many thanks, Jennifer -- Jennifer Ashton, PhD Senior Research Technician York Neuroimaging Centre Working days: Monday, Tuesday and Wednesday

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Fwd: [research-coding-club-group] Pipelines and Workflow Management - Wednesday 12th June 14:00
by Joe Lyons 05 Jun '24

05 Jun '24

Next Research Coding Club is in Psychology next week if anyone is interested. ---------- Forwarded message --------- From: Killian Murphy <killian.murphy(a)york.ac.uk> Date: Wed, 5 Jun 2024 at 11:05 Subject: [research-coding-club-group] Pipelines and Workflow Management - Wednesday 12th June 14:00 To: Research Coding Club <research-coding-club-group(a)york.ac.uk> Cc: Alastair Droop <alastair.droop(a)york.ac.uk> Hi all, Our next talk will be about *Pipelines and Workflow Management*, presented by Alastair Droop from the University's Data Science Hub. It will take place on *Wednesday the 12th of June from 14:00 - 15:00 in PS/C/003 Lecture Room <https://www.york.ac.uk/map/#locidps-c-003> (Psychology).* It will also be available online at *http://bit.ly/YorkCodingClub* <https://www.google.com/url?q=http://bit.ly/YorkCodingClub&sa=D&source=calen…> . Alastair is going to talk us through use cases for and development of effective workflow management pipelines - reproducible sequences of well-defined computational tasks. Alastair will be illustrating their use with Nextflow. *This will definitely be of interest to* *anybody whose work includes data analysis*, but these techniques can be applied to a wide range of computational tasks so do come along if you have the time. Hope to see you there. -- Killian Murphy Research Software Engineer Wolfson Atmospheric Chemistry Laboratories University of York Heslington York YO10 5DD +44 (0)1904 32 3634 e-mail disclaimer: http://www.york.ac.uk/docs/disclaimer/email.htm -- You received this message because you are subscribed to the Google Groups "Research Coding Club" group. To unsubscribe from this group and stop receiving emails from it, send an email to research-coding-club-group+unsubscribe(a)york.ac.uk. To view this discussion on the web, visit https://groups.google.com/a/york.ac.uk/d/msgid/research-coding-club-group/C… <https://groups.google.com/a/york.ac.uk/d/msgid/research-coding-club-group/C…> . -- Thanks Joe Lyons, Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)york.ac.uk 01904 325949 | 01904 325940

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YNiC Seminar Tomorrow (Wednesday) at 2pm
by Jennifer Ashton 04 Jun '24

04 Jun '24

Hello, We have our final seminar of the academic year tomorrow* at 2pm. Dr Clara Humpston* will be presenting a talk titled* “Structural and functional neural correlates of anomalous self-experiences in a nonclinical sample”*. Please join us at YNiC to listen to the talk in Open Plan, or catch it on zoom using the following link: https://york-ac-uk.zoom.us/j/95197496363?pwd=G3YGIcV0u6EGQ70tby9N3harnDO7b6… <https://www.google.com/url?q=https://york-ac-uk.zoom.us/j/95197496363?pwd%3…> We look forward to seeing many of you tomorrow at 2pm. Many thanks, Jennifer -- Jennifer Ashton, PhD Senior Research Technician York Neuroimaging Centre Working days: Monday, Tuesday and Wednesday

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Important - participant confidentiality reminder
by Andre Gouws 31 May '24

31 May '24

NOBODY should discuss, either between themselves or with the participant scanned, anything they think they may or may not have seen on that participant's MRI scan. This applies while in the scan room while someone is being scanned, or after when looking at their data. Anyone who sees something on a scan can bring any concerns to any member of YNiC staff. This should be done DISCRETELY (i.e. behind a closed door) as soon as possible after their scan session - do not call someone to the scan room or stand in open plan and say "I saw something weird in this person's brain". Discussing potentially sensitive details about someone's MRI scan could constitute a breach of confidentiality and there could be very serious consequences - Just don't do it. Please rest assured that we have processes in place to have participants' scans reviewed by medical professionals if required. And we implement those processes as discretely as we can. Please help us do that. Sincerely, -- André ************************************************************************ *André Gouws PhD* *Lead Technical Specialist* *York Neuroimaging Centre and York Diagnostic Imaging* *Departmental Safety Advisor - Dept. of Psychology* *University of York* *The Biocentre* *York Science Park* *Heslington* *YO10 5NY*

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Update: Storage issues
by Joe Lyons 28 May '24

28 May '24

The storage nodes have rebooted and are now stable. Please email support(a)ynic.york.ac.uk if you have any further issues. Apologies for the inconvenience. Thanks Joe Joe Lyons, Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)york.ac.uk 01904 325949 | 01904 325940

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Storage issues
by Joe Lyons 28 May '24

28 May '24

Hello We're currently seeing some issues with the storage nodes and are in the process rebooting them. We'll update you once they have come online and are stable. Thanks Joe Joe Lyons, Systems Administrator York Neuroimaging Centre (YNiC), University of York joe.lyons(a)york.ac.uk 01904 325949 | 01904 325940

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YNiC newsletter
by Richard Aveyard 22 May '24

22 May '24

Hello, We have an upcoming closure due to a bank holiday this coming Monday, an exciting research seminar will be presented by Clara Humpston, and details of our latest scheduled training sessions can be found below. *Bank holidays* There is an upcoming University-wide bank holidays, so *YNiC will not be open on **Monday the 27th of May*. Remote desktop access will continue to be available, but there will be no technical support. *YNiC Seminar* *On Wednesday the 5th of June at 1pm *we will host a seminar by *Clara Humpston* on the subject of "'Structural and functional neural correlates of anomalous self-experiences in a nonclinical sample". If you would like to give a talk this semester, please get in touch, there are no specific requirements; presentations can include previously collected data, new data, pilot data and/or study plans and ideas. This is a great way to get feedback in a relaxed and friendly environment. Please message support(a)ynic.york.ac.uk. *YNiC User Inductions* If you are aware of any new students/staff that will require access to YNiC and/or an IT account, they must attend a YNiC user induction. Our next induction will be on *Tuesday the 28th of May at 10:00*. Please ask them to contact support(a)ynic.york.ac.uk to sign up. *Level 0 operator training* *The next L0 training session will be held on Friday the 24th of May, 13:00-15:00. * Please note that users requesting Level 0 training should be a PhD, RA/Postdoc, or staff, and should already have a project proposal submitted to YNiC. Please email support(a)ynic.york.ac.uk if you have any questions or wish to book on to this session. Please note that sessions are limited to 4 trainees, which will be allocated on a first-come first-served basis. Training must be booked at least a week before the session date, in order to reserve the scanner booking. Cheers, Rich -- Dr Richard Aveyard Senior Technical Specialist York NeuroImaging Centre University of York, UK

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