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YNiC today
by Gary Green 06 Mar '08

06 Mar '08

Dear colleagues Last week we held a YNiC Thursday seminar on using Unix on the Macs. The attendance was quite low suggesting that Users probably had enough knowledge on this topic for them to be able to do what they needed at that level of computing. The original idea was that the session would continue this week but as we have had apologies even from those who had attended last week, it seems that we should not hold today's seminar. So, NO seminar today. Next week there will be a new project presentation, 4pm, Thursday the 13th, YNiC open plan. All welcome Gary -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. 01904 435349 fax 01904 435356 mobile 07986 778954

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URGENT : Scratch space
by Gary Green 05 Mar '08

05 Mar '08

Dear colleagues As you know we have been encouraging users to use their 'scratch' disc space for temporary files and as a workspace for intermediate analysis. We monitor the total usage of this space daily and it is growing very rapidly. We predict that this space will run out in a few days if we do not act. The majority of the usage is by just a few users but, please, if you have a large amount of data/information in scratch, can you look at it and endeavour to delete anything that is redundant. If we do not do this then the systems will fail. One way of getting around these problems is to use a group space for your project. Group scratch is not used much and is an efficient way of sharing information without it having to be duplicated by each user, within a group, in their own scratch space. If your project does not have a group scratch directory then please email it-support(a)ynic.york.ac.uk thanks Gary -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. 01904 435349 fax 01904 435356 mobile 07986 778954

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MEG now available
by Gary Green 05 Mar '08

05 Mar '08

Dear Colleagues MEG is now up and running again. You can now book your MEG sessions again through Claire. It looks as though the Polhemus failed due to a fault in an serial line isolator. So the whole system failed due to a £5 component. Sorry! While we were waiting for a delivery of a new Polhemus system and the engineeer, the YNiC team took the opportunity to reorganise the MEG equipment room. The equipment and cables have been tidied, labelled and organised. Please do not change anything in the equipment room as there is now actually no need to change cables or equipment. The camera has also been moved in the MSR (magnetically shielded room) and it is now possible to monitor your subjects during an experiment even if you are using the large screen. Please remember to tell your subjects that they are being monitored. Happy MEGing Gary -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. 01904 435349 fax 01904 435356 mobile 07986 778954

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Today at YNiC
by Gary Green 04 Mar '08

04 Mar '08

Dear colleagues Today we are being visited by the VC, the pro-VC for research and Sir David Cooksey. David Cooksey wrote the recent government report on medical research which has resulted in the setting up of the National Institute of Medical Research and the integration of the NHS R&D programme with the MRC. His current main interests are concerned with translational research. If ...., you were thinking of visiting YNiC yourself today then it would help us if you happened to be present in open plan between 1.30 and 2.15 with some interesting images on the screen. If anyone is doing experiments within MRI or MEG then please be prepared to have visitors ask some questions about what you are doing. Of course I cannot predict if they will visit, whether they will be on time or whether they will actually stop as we walk through open plan. thank you Gary -- Gary Green York Neuroimaging Centre The Biocentre York Science Park York YO10 5DG tel (+44) (0) 1904 435349 fax (+44) (0) 1904 435356 mobile 07986778954

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[Fwd: [SPM] UCLA Advanced Neuroimaging Summer School]
by Gary Green 29 Feb '08

29 Feb '08

FYI We are now accepting applications for the 2008 UCLA Advanced Neuroimaging Summer School, to be help July 14-25, 2008 in Los Angeles, CA. For more information and to apply for the course, please visit: http://www.poldracklab.org/nitp2008 Cheers, Russ --- Russell A. Poldrack, Ph.d. Associate Professor Wendell Jeffrey and Bernice Wenzel Term Chair in Behavioral Neuroscience UCLA Department of Psychology Franz Hall, Box 951563 Los Angeles, CA 90095-1563 phone: 310-794-1224 fax: 310-206-5895 email: poldrack(a)ucla.edu web: www.poldracklab.org

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YNiC ASC - March 19th - Auditory fMRI
by Michael Simpson 28 Feb '08

28 Feb '08

Dear all, this is just a quick mailing to advertise a YNiC ASC on March 19th. It will be on the subject of Auditory fMRI, and will be chaired by Quentin Summerfield. Should you want to contribute anything to the agenda, please email Quentin in advance <aqs1(a)york.ac.uk>. Otherwise, simply come along and join in the discussion. As before, a short digest of the YNiC ASC will be emailed to ynic-users a few days after the session. Nearer the time, Quentin will forward an agenda (i.e. once it has been established). And as before, the session will take place in Psychology B020, at 4pm. Thanks, Michael -- Dr Michael Simpson Science Liaison Officer York Neuroimaging Centre Innovation Way York YO10 5DG Tel: 01904 567614 Web: http://www.ynic.york.ac.uk

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Thursday Seminar
by Sam Johnson 27 Feb '08

27 Feb '08

Hello all, Just a reminder and a little more information about this Thursday's Seminar at YNiC. Mark has prepared an introduction to Unix that I will do my very best to translate into something we mere mortals can understand. This week we'll be covering some of the generic basics, including the permissions problem I know has been an issue of late. There'll also be information on some simple command line tools and the basics of scripting. Next week we'll be looking at YNiC specific information, including some useful hints and tips that will hopefully help to save you time and blood pressure. Thanks, Sam

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MEG at YNiC : current status
by Gary Green 26 Feb '08

26 Feb '08

Dear colleagues I am sorry to have to announce that MEG is not working. We have had a problem since late last week with the Polhemus system which is needed for co-registration of the data with MRI. We thought we had fixed it over the weekend but it is now clear that we have to have a new unit flown in from San Diego. We will also need to get 4D engineers to attend to fix the problem as it is not simply one of replacing the unit. Unfortunately this means that MEG may be unavailable until the middle of next week. I know this is going to be a major inconvenience as MEG is currently very busy. As soon as it is working again we will let you know and will help you rebook or reorganise your time in MEG. We will almost certainly have to organise block booking so that several participants can be scanned one after the other to get through the backlog. The MEG system itself is working fine! Projects are stalled because of a piece of equipment that costs less than 1% of the original MEG cost. Sorry, Gary -- Gary Green Director York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. 01904 435349 fax 01904 435356 mobile 07986 778954

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[Fwd: [Eeglablist] FIAS Summer School Theoretical Neuroscience & Complex Systems (2-24 August 2008, Frankfurt, Germany)]
by Gary Green 21 Feb '08

21 Feb '08

<apologies for multiple postings> Announcement and Call for Applications: The Frankfurt Institute for Advanced Studies (FIAS) is organizing a PENS-Blackwell Summer School on: Theoretical Neuroscience & Complex Systems Frankfurt, Germany, August 2-24, 2008 We invite applications for this three-week summer school from graduate students and post-docs in experimental and computational neuroscience and theoretical physics. Up to 30 students will be accepted. The school is supported by PENS - the Programme of European Neuroscience Schools, an IBRO-FENS collaboration. Application deadline: Monday, April 7. School: http://fias.uni-frankfurt.de/neuro_school/ Application: http://fens.mdc-berlin.de/pens/2008/schools/frankfurt/ Scientific Directors: W. Maass, C. von der Malsburg, G. Pipa, W. Singer, J. Triesch, M. Tsodyks Lecturers and Tutors Include: * Dana Ballard, UT Austin, USA * Emery Brown, Harvard/MIT, Cambridge, USA * Yang Dan, UC Berkeley, USA * Sophie Deneve, CNRS, France * Rodney Douglas, ETH Zurich, Switzerland * Jordi Garcia-Ojalvo, Universitat Politecnica de Catalunya, Spain * Wulfram Gerstner, EPFL, Switzerland * Ann Graybiel, MIT, USA * Mary Hayhoe, UT Austin, USA * Jurgen Kurths, University of Potsdam, Germany, * Jorg Lucke, FIAS, Germany * Wolfgang Maass, Technische Universitat, Graz, Austria * Christoph von der Malsburg, FIAS, Germany * Sergio Neuenschwander, MPIH, Germany * Danko Nikolic, MPIH, Germany * Gordon Pipa, FIAS and MPIH, Germany * Austra Saudargiene, Vytautas Magnus University, Lithuania * Kerstin Schmidt, MPIH, Germany * Wolf Singer, MPIH, Germay * Olaf Sporns, Indiana University, USA * Jochen Triesch, FIAS, Germany * Peter Uhlhaas, MPIH, Germany * Raul Vicente, FIAS and MPIH, Germany * Cornelius Weber FIAS, Germany * Michael Wibral, MPIH, Germany * Kai Willadsen, FIAS, Germany * Junmei Zhu, FIAS, Germany Topics: mathematical and biological foundations of theoretical neuroscience; analysis of neural data; modelling of neurons and small networks; plasticity and learning; modelling higher cognitive functions, embodiment Format: - a 3-day pre-school to establish a common foundation and language - daily lectures by renowned international faculty - hands-on work on self-defined projects in interdisciplinary groups - round table discussions - a social and cultural program Registration Fees, Travel Expenses and Waivers: The school covers the expenses for accommodation and the cultural program. Students will have to pay a registration fee of 400 EURO. A small number of grants are available for students who need support for their travel expenses and a waiver for the registration fee. They are primarily intended for students from disadvantaged regions. If you consider applying for financial support, please indicate this in your application. We also need an estimate of your travel expenses (in EUROs). For further information, please contact: Neuro School Frankfurt Institute for Advanced Studies Johann Wolfgang Goethe University Ruth-Moufang-Str. 1 60438 Frankfurt am Main Germany email: neuro_school(a)fias.uni-frankfurt.de tel: +49 69 798 47601 fax: +49 69 798 47611

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Msc project presentations
by Silvia Gennari 20 Feb '08

20 Feb '08

Hi, all, This is just a reminder that the second part of the Msc project presentations that have started last week will continue tomorrow Thursday at 4PM at YNiC. Everyone is welcome S Silvia Gennari Department of Psychology University of York York, YO10 5DD United Kingdom

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