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#   See COPYING file distributed along with the NiBabel package for the
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'''Tests for mghformat reading writing'''

import os

import numpy as np

from ...externals.six import BytesIO
from .. import load, save, MGHImage
from ..mghformat import MGHHeader, MGHError
from ...tmpdirs import InTemporaryDirectory
from ...fileholders import FileHolder

from nose.tools import assert_true, assert_false

from numpy.testing import (assert_equal, assert_array_equal,
                           assert_array_almost_equal, assert_almost_equal,
                           assert_raises)

from ...testing import data_path
from numpy.testing import assert_equal, assert_array_equal, \
    assert_array_almost_equal, assert_almost_equal, assert_raises

# sample voxel to ras matrix (mri_info --vox2ras)
v2r = np.array([[1, 2, 3, -13], [2, 3, 1, -11.5],
                [3, 1, 2, -11.5], [0, 0, 0, 1]], dtype=np.float32)
# sample voxel to ras - tkr matrix (mri_info --vox2ras-tkr)
v2rtkr = np.array([[-1.0, 0.0, 0.0,  1.5],
                   [0.0, 0.0, 1.0, -2.5],
                   [0.0, -1.0, 0.0, 2.0],
                   [0.0, 0.0, 0.0, 1.0]], dtype=np.float32)


def test_read_mgh():
    # test.mgz was generated by the following command
    # mri_volsynth --dim 3 4 5 2 --vol test.mgz
    # --cdircos 1 2 3 --rdircos 2 3 1 --sdircos 3 1 2
    # mri_volsynth is a FreeSurfer command
    mgz_path = os.path.join(data_path, 'test.mgz')
    mgz = load(mgz_path)

    # header
    h = mgz.get_header()
    assert_equal(h['version'], 1)
    assert_equal(h['type'], 3)
    assert_equal(h['dof'], 0)
    assert_equal(h['goodRASFlag'], 1)
    assert_array_equal(h['dims'], [3, 4, 5, 2])
    assert_array_almost_equal(h['mrparms'], [2.0, 0.0, 0.0, 0.0])
    assert_array_almost_equal(h.get_zooms(), 1)
    assert_array_almost_equal(h.get_vox2ras(), v2r)
    assert_array_almost_equal(h.get_vox2ras_tkr(), v2rtkr)

    # data. will be different for your own mri_volsynth invocation
    v = mgz.get_data()
    assert_almost_equal(v[1, 2, 3, 0], -0.3047, 4)
    assert_almost_equal(v[1, 2, 3, 1], 0.0018, 4)


def test_write_mgh():
    # write our data to a tmp file
    v = np.arange(120)
    v = v.reshape((5, 4, 3, 2)).astype(np.float32)
    # form a MGHImage object using data and vox2ras matrix
    img = MGHImage(v, v2r)
    with InTemporaryDirectory():
        save(img, 'tmpsave.mgz')
        # read from the tmp file and see if it checks out
        mgz = load('tmpsave.mgz')
        h = mgz.get_header()
        dat = mgz.get_data()
        # Delete loaded image to allow file deletion by windows
        del mgz
    # header
    assert_equal(h['version'], 1)
    assert_equal(h['type'], 3)
    assert_equal(h['dof'], 0)
    assert_equal(h['goodRASFlag'], 1)
    assert_array_equal(h['dims'], [5, 4, 3, 2])
    assert_array_almost_equal(h['mrparms'], [0.0, 0.0, 0.0, 0.0])
    assert_array_almost_equal(h.get_vox2ras(), v2r)
    # data
    assert_almost_equal(dat, v, 7)


def test_write_noaffine_mgh():
    # now just save the image without the vox2ras transform
    # and see if it uses the default values to save
    v = np.ones((7, 13, 3, 22)).astype(np.uint8)
    # form a MGHImage object using data
    # and the default affine matrix (Note the "None")
    img = MGHImage(v, None)
    with InTemporaryDirectory():
        save(img, 'tmpsave.mgz')
        # read from the tmp file and see if it checks out
        mgz = load('tmpsave.mgz')
        h = mgz.get_header()
        # Delete loaded image to allow file deletion by windows
        del mgz
    # header
    assert_equal(h['version'], 1)
    assert_equal(h['type'], 0)  # uint8 for mgh
    assert_equal(h['dof'], 0)
    assert_equal(h['goodRASFlag'], 1)
    assert_array_equal(h['dims'], [7, 13, 3, 22])
    assert_array_almost_equal(h['mrparms'], [0.0, 0.0, 0.0, 0.0])
    # important part -- whether default affine info is stored
    ex_mdc = np.array([[-1, 0, 0],
                       [0, 0, -1],
                       [0, 1, 0]], dtype=np.float32)
    assert_array_almost_equal(h['Mdc'], ex_mdc)

    ex_pxyzc = np.array([0, 0, 0], dtype=np.float32)
    assert_array_almost_equal(h['Pxyz_c'], ex_pxyzc)


def bad_dtype_mgh():
    ''' This function raises an MGHError exception because
    uint16 is not a valid MGH datatype.
    '''
    # try to write an unsigned short and make sure it
    # raises MGHError
    v = np.ones((7, 13, 3, 22)).astype(np.uint16)
    # form a MGHImage object using data
    # and the default affine matrix (Note the "None")
    img = MGHImage(v, None)


def test_bad_dtype_mgh():
    # Now test the above function
    assert_raises(MGHError, bad_dtype_mgh)


def test_filename_exts():
    # Test acceptable filename extensions
    v = np.ones((7, 13, 3, 22)).astype(np.uint8)
    # form a MGHImage object using data
    # and the default affine matrix (Note the "None")
    img = MGHImage(v, None)
    # Check if these extensions allow round trip
    for ext in ('.mgh', '.mgz', '.mgh.gz'):
        with InTemporaryDirectory():
            fname = 'tmpname' + ext
            save(img, fname)
            # read from the tmp file and see if it checks out
            img_back = load(fname)
            assert_array_equal(img_back.get_data(), v)
            del img_back


def _mgh_rt(img, fobj):
    file_map = {'image': FileHolder(fileobj=fobj)}
    img.to_file_map(file_map)
    return MGHImage.from_file_map(file_map)


def test_header_updating():
    # Don't update the header information if the affine doesn't change.
    # Luckily the test.mgz dataset had a bad set of cosine vectors, so these
    # will be changed if the affine gets updated
    mgz_path = os.path.join(data_path, 'test.mgz')
    mgz = load(mgz_path)
    hdr = mgz.get_header()
    # Test against mri_info output
    exp_aff = np.loadtxt(BytesIO(b"""
    1.0000   2.0000   3.0000   -13.0000
    2.0000   3.0000   1.0000   -11.5000
    3.0000   1.0000   2.0000   -11.5000
    0.0000   0.0000   0.0000     1.0000"""))
    assert_almost_equal(mgz.get_affine(), exp_aff, 6)
    assert_almost_equal(hdr.get_affine(), exp_aff, 6)
    # Test that initial wonky header elements have not changed
    assert_equal(hdr['delta'], 1)
    assert_almost_equal(hdr['Mdc'], exp_aff[:3, :3].T)
    # Save, reload, same thing
    img_fobj = BytesIO()
    mgz2 = _mgh_rt(mgz, img_fobj)
    hdr2 = mgz2.get_header()
    assert_almost_equal(hdr2.get_affine(), exp_aff, 6)
    assert_equal(hdr2['delta'], 1)
    # Change affine, change underlying header info
    exp_aff_d = exp_aff.copy()
    exp_aff_d[0, -1] = -14
    # This will (probably) become part of the official API
    mgz2._affine[:] = exp_aff_d
    mgz2.update_header()
    assert_almost_equal(hdr2.get_affine(), exp_aff_d, 6)
    RZS = exp_aff_d[:3, :3]
    assert_almost_equal(hdr2['delta'], np.sqrt(np.sum(RZS ** 2, axis=0)))
    assert_almost_equal(hdr2['Mdc'], (RZS / hdr2['delta']).T)


def test_cosine_order():
    # Test we are interpreting the cosine order right
    data = np.arange(60).reshape((3, 4, 5)).astype(np.int32)
    aff = np.diag([2., 3, 4, 1])
    aff[0] = [2, 1, 0, 10]
    img = MGHImage(data, aff)
    assert_almost_equal(img.get_affine(), aff, 6)
    img_fobj = BytesIO()
    img2 = _mgh_rt(img, img_fobj)
    hdr2 = img2.get_header()
    RZS = aff[:3, :3]
    zooms = np.sqrt(np.sum(RZS ** 2, axis=0))
    assert_almost_equal(hdr2['Mdc'], (RZS / zooms).T)
    assert_almost_equal(hdr2['delta'], zooms)


def test_eq():
    # Test headers compare properly
    hdr = MGHHeader()
    hdr2 = MGHHeader()
    assert_equal(hdr, hdr2)
    hdr.set_data_shape((2, 3, 4))
    assert_false(hdr == hdr2)
    hdr2.set_data_shape((2, 3, 4))
    assert_equal(hdr, hdr2)


def test_header_slope_inter():
    # Test placeholder slope / inter method
    hdr = MGHHeader()
    assert_equal(hdr.get_slope_inter(), (None, None))
