Software updates at YNiC

Dear all, Some changes and updates to supported software are being made this evening at YNiC. Information about these changes can be found at https://www.ynic.york.ac.uk/doc/ITPages/FAQ/Misc/ChangeLog A brief summary follows: These changes should be mainly user invisible (except for those who build their own software from source which uses VTK, please contact me for help): * VTK and the python bindings are being updated from 5.0 to 5.4 * Various libraries and FSLView have been updated to be built against VTK 5.4 New software: * pygame 1.8.1, pyglet and psychopy 1.51 have been added to the image * Freesurfer dependencies: libvxl1.13, ebtks 1.6.2, kwwidgets 1.0.0 and teem 1.10 have been added to the image * n3 1.11.0 (from MNI) and libmni-perl have been added to the image (mainly as freesurfer dependencies but some people may have other uses for them) * Slicer 3.4.0 has been added to the image (http://www.slicer.org/) * Freesurfer 4.5 has been added to the image but is not fully tested. Please contact me before using this for instructions. There will be some testing work performed in the next week or so and Liat, Padraig, Tom and myself have discussed running a training session once we're sure it's working. * ANTS (http://www.picsl.upenn.edu/ANTS/) has been installed. Please see https://www.ynic.york.ac.uk/doc/ITPages/FAQ/Misc/ANTS for notes on YNiC specific things for this software. * Nutmeg 3.1 has been added to the system (using the ynicInit system in Matlab; please see https://www.ynic.york.ac.uk/doc/ITPages/FAQ/Matlab/ExtraToolboxes ) As ever, please let me know if you see anything problematic. Thanks, Mark -- Mark Hymers York Neuroimaging Centre