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YNiC Software Upgrade
by Mark Hymers 16 Sep '15

16 Sep '15

Dear all, As announced previously, YNiC staff will be performing a large software upgrade on Monday and Tuesday next week. All systems (including remote desktop) will be unavailable for the duration of the upgrade and the centre itself will be closed to users. An email will be sent to ynic-users once systems are back online and the centre is open. Details of the upgrade can be found at: https://www.ynic.york.ac.uk/docs/ITPages/Summer2015Upgrade **Please note that we are changing default versions of a range of software, including some analysis software - please ensure that you have read this email or the page concerned** A summary of the current version of the page follows: =================================================================================== Operating System ---------------- The primary YNiC operating system will change from Debian 7.0 (wheezy) to Debian 8.0 (jessie). The window system in use will remain as XFCE and we do not expect many major changes in the appearance of the system. General Applications -------------------- The following applications will be replaced: * evince (PDF viewer) will be replaced by atril * eog (Image viewer) will be replaced by eom * File Roller (File compression utility) will be replaced by engrampa * Gedit (Text editor) will be replaced by pluma FSL --- The default version of FSL will change to 5.0.8. This is a major change from 4.1. FSL 4.1.9 is still available on the system. Details of how to use a non-default FSL version can be found at docs/ITPages/FAQ/FSL/Versions. Our advice is not to mix and match versions of FSL within analyses, but to start new projects using 5.0. FSL 5.0 includes new atlases and segmentations - these are all installed in the usual location /usr/share/fsl/data. Python ------ python2.7 and python3.4 are available on the YNiC systems. YNiC still primarily supports python2, however we are aiming for a complete python3 system where possible and will attempt to backport any modules needed to support a full scientific software stack on python3. We aim to change our default version of python to python3 from Summer 2016 (subject to all modules being available in time). Taught courses using Python in 2015/16 will use python2, but will aim to use python3 compatible syntax. Python Modules -------------- The complete list of python module changes is available at the page linked above. Matlab ------ The default version of MATLAB is now 8.5 (R2015a). For backwards compatibility, MATLAB 7.14 (R2012a) is also available. MATLAB Toolboxes ---------------- * SPM 2 and 5 remain available at their existing versions. * SPM 8 has been updated to r6313. * SPM 12 has been updated to r6470. R - * R has been upgraded from 2.15 to 3.1.1. * Rstudio has been upgraded from 0.97.551 to 0.99.484. * Various R libraries have been upgraded. Freesurfer ---------- Only freesurfer 5.3 will now be supported. Freesurfer 5.1 has been removed. The exact revision (CVS date) of freesurfer 5.3 will be confirmed before upgrade. The existing pool of automatic freesurfer extractions was generated using freesurfer 5.1. We intend to archive these and regenerate (over the next few weeks) all of the extractions using the updated freesurfer 5.3. =================================================================================== If you have any queries, please contact myself <mark.hymers(a)ynic.york.ac.uk> or Paul Elliott <paul.elliott(a)ynic.york.ac.uk> Thanks, Mark -- Mark Hymers, York Neuroimaging Centre Please note that my email address is: mark.hymers(a)ynic.york.ac.uk Responses to messages sent to other addresses may be delayed

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Fwd: [BIC-announce] Postdoc, PhD and RA positions available at the BIC
by Jonny Smallwood 12 Sep '15

12 Sep '15

Please find an advert for positions at the Brain Imaging Centre at the MNI.: *From: *"Andrea Bernasconi, Dr." <andrea.bernasconi(a)mcgill.ca> *Subject: **[BIC-announce] Postdoc, PhD and RA positions available at the BIC* *Date: *September 11, 2015 at 4:20:50 PM GMT-4 *To: *BIC-announce <bic-announce(a)bic.mni.mcgill.ca> We are currently looking for *3* enthusiastic and skilled team players (*1 PhD student, 1 Postdoc, 1 RA*) to join the *Neuroimaging of Epilepsy Laboratory* at the Brain Imaging Center (BIC) of the Montreal Neurological Institute (McGill University, Montreal, Canada) http://www.bic.mni.mcgill.ca/~noel Our lab is part of the BIC, an internationally recognized and multidisciplinary centre of neuroimaging, and associated to the Epilepsy Group of the Montreal Neurological Institute and Hospital, a tertiary center that evaluates approximately 200 patients per year for the pre-surgical investigation of drug-resistant seizures. Our group brings together graduate students and postdoctoral fellows in Neuroscience, Cognitive Science, Computer Science, Biomedical Engineering, and Neurology. We use high- and ultra-high field (3 and 7T) structural and functional MRI analysis to characterize cortical architecture, function, metabolism, and networks. We seek to identify novel patient phenotypes and biomarkers of disease. Main topics include automated lesion detection through neuroimage-based machine-learning, surface-based subcortical and cortical modelling, analysis of brain networks using graph-theory. We are interested in tracking disease progression and its consequences on brain plasticity, connectivity, and cognition. The *postdoctoral fellow *will carry our research projects that combine multi-modal neuroimaging with advanced data analysis (graph theoretical network analysis, machine learning, multivariate modeling) in large and well-documented cohorts of patients with drug-resistant epilepsy. Possibility to participate in several multi-centric and longitudinal studies. Requirements: PhD in Neuroscience, Computer Science, Cognitive Science, Engineering, or related fields; experience in neuroimaging, data analysis, programming; strong publication record. The *PhD student* will perform research centered on the development of neuroimaging applications to improve our understanding and diagnostic routines of human epilepsy. The PhD will be carried out within the Integrated Program in Neuroscience at McGill University (IPN, https://www.mcgill.ca/ipn/), the largest inter-disciplinary, inter-departmental graduate program in neuroscience in Canada. Requirements: MSc in Neuroscience, Cognitive Science, Computer Science, Biomedical Engineering, or related fields; solid mathematical and statistical knowledge; previous experience in neuroimaging and data analysis is an asset. The *full-time research assistant (RA)* will help with subject recruitment; administration of questionnaires and neurocognitive tasks; MRI scheduling and data acquisition (with assistance of technician); data quality-control and image processing; database management; technical support. Requirements: BSc/BA in Neuroscience, Cognitive Science, Psychology, or related fields; organizational talent and computer skills; willingness to accept flexible working schedule; knowledge of French (spoken and written). All candidates are expected to show strong communication skills and willingness to learn and help others within a multidisciplinary team. Starting dates are flexible. ** Full applications (cover letter, CV, and names of 2 referees; PhD candidates should also send transcripts) should be sent to: andrea.bernasconi(a)mcgill.ca _______________________________________________ BIC-announce mailing list BIC-announce(a)bic.mni.mcgill.ca http://www.bic.mni.mcgill.ca/mailman/listinfo/bic-announce -- Jonathan Smallwood Reader in Psychology / Cognitive Neuroscience University of York, England.

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YNiC Science day tomorrow, 13:30
by James Davey 08 Sep '15

08 Sep '15

Hello Everyone, Just a reminder that the second YNiC science day is tomorrow at 13:30, here in the Psychology department. I have attached the previously circulated flyer as well as the program for this year. YNiC science day 2015 program <https://docs.google.com/a/york.ac.uk/document/d/12OFO2gwpiwWx41jWTM_g6DotsY…> Hope to see you all there! James D

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YNiC annual closure for service upgrades
by Gary Green 08 Sep '15

08 Sep '15

Dear All Every year we perform an overhaul of all of the systems and software within YNiC. Most of the work goes on in the background but for the final part of this we need to close the Centre so that all the software installs can take place and any necessary hardware changes can be made. This year the Centre will be closed on the 21st and 22nd of September. No computer services, including the remote desktop server will be available. An email will be sent to all users when normal service is resumed. The Centre will be physically closed as well to all users on those days Thanks Gary -- --------------- Gary Green York Neuroimaging Centre & Centre for Hyperpolarisation in Magnetic Resonance The Biocentre York Science Park Innovation Way Heslington York YO10 5NY tel +44 (0) 1904 435349 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004 http://www.ynic.york.ac.uk http://www.york.ac.uk/chym/ https://www.ynic.york.ac.uk/about-us/people/ggrg PA : Sarah Finch tel +44 (0) 1904 435329 fax +44 (0) 1904 435356 Sarah.Finch(a)york.ac.uk

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Remote desktop usage
by Mark Hymers 02 Sep '15

02 Sep '15

Hi all, We've recently started seeing people using the remote desktop server to perform large scale analyses. This is just a reminder that it is not for that sort of work. Performing large scale analysis jobs in this way impacts on other users of the system and has caused us to have to kill jobs. Large scale analysis jobs *must* be submitted to the cluster. This is fairly straightforward for FSL jobs, MATLAB jobs, python scripts and most other general tools. There are some examples on the YNiC wiki: https://www.ynic.york.ac.uk/docs/ITPages/Cluster https://www.ynic.york.ac.uk/docs/ITPages/MRI/FSLCluster https://www.ynic.york.ac.uk/docs/ITPages/IT/ClusterMatlab https://www.ynic.york.ac.uk/docs/ITPages/IT/ClusterScripts We are going to work on improving the documentation regarding use of the cluster. In the meantime, if you have any questions regarding using the cluster for analysis, please contact either myself <mark.hymers(a)ynic.york.ac.uk> or Paul Elliott <paul.elliott(a)ynic.york.ac.uk> Thanks, Mark -- Mark Hymers, York Neuroimaging Centre Please note that my email address is: mark.hymers(a)ynic.york.ac.uk Responses to messages sent to other addresses may be delayed

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This Thursday's ynic project presentation and connectivity club
by Gary Green 02 Sep '15

02 Sep '15

Dear Users This Thursday we will have a shared session with an internal project proposal presentation and a connectivity club session. Both will take place in B020 starting at 15:30 till 17:00. 1) Project proposal by Kay Weibert (15:30-16:00): "Do patterns of response in face-selective regions represent facial identity?" 2) Connectivity club with Dr Boris Bernhardt from the Montreal Neurological Institute (16-17:00). He works with several different methods of brain imaging and uses these tools in both healthy and non healthy populations. Everyone is welcome to attend. Refreshments will be available after the seminar. -- --------------- Gary Green York Neuroimaging Centre & Centre for Hyperpolarisation in Magnetic Resonance The Biocentre York Science Park Innovation Way Heslington York YO10 5NY tel +44 (0) 1904 435349 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004 http://www.ynic.york.ac.uk http://www.york.ac.uk/chym/ https://www.ynic.york.ac.uk/about-us/people/ggrg PA : Jackie Mayhew tel +44 (0) 1904 435329 fax +44 (0) 1904 435356 Jackie Mayhew <jcm529(a)york.ac.uk>

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YNiC Science Day - 9th September
by James Davey 01 Sep '15

01 Sep '15

Hello everyone, Please find enclosed a program for the upcoming YNiC science day. Please let me know if you wish to attend so that I can make sure we have enough tea/coffee and biscuits! I have also attached the flyer if you missed my previous email. Thanks, James D

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jobs etc
by Gary Green 31 Aug '15

31 Aug '15

1. The Cohen Laboratory in the Department of Psychology and Neuroscience at the University of North Carolina, Chapel Hill, directed by Dr. Jessica Cohen, is seeking a full-time lab manager or research assistant beginning January 2016. We investigate how functional brain networks interact and reconfigure when confronted with changing cognitive demands, when experiencing transformations across development, and when facing disruptions in healthy functioning due to disease. The lab uses behavioral, neuroimaging, and clinical approaches taken from neuroscience, psychology, and mathematics to address our research questions. This is an excellent position for anyone who would like to pursue graduate work in cognitive, developmental, and/or clinical neuroscience. Responsibilities include recruiting and scheduling participants for research studies (healthy adults, typically developing children, and children with ADHD), data collection (MRI and behavioral), data analysis (using neuroimaging software such as FSL, SPM, AFNI), administrative duties, IRB management, and general management of lab operations. Necessary qualifications include: 1) an undergraduate degree in Psychology, Neuroscience, Computer Science, or a related field; 2) prior research experience with human participants; and 3) strong organizational, interpersonal communication, and writing skills, and high motivation and initiative. Preference will be given to applicants who additionally have experience with: 1) unix, python, matlab, or another programming language; 2) neuroimaging analysis software (e.g., FSL, AFNI, SPM); 3) collecting and analyzing fMRI data; and 4) working with children. Commitment must be for at least one year, but position can be extended. Interested applicants should send their CV, at least two letters of reference, transcript with relevant coursework, and a cover letter describing their research interests and career goals to Dr. Jessica Cohen (jrcohen(a)unc.edu <mailto:jrcohen@unc.edu>). Additional information can be found at: http://cohenlab.web.unc.edu/ ========================= 2. Postdoctoral position: MULTIMODAL IMAGING OF NETWORK CONNECTIVITY IN AUTISM Brain Development Imaging Laboratory The Brain Development Imaging Laboratory (BDIL) at the Dept. of Psychology, San Diego State University (SDSU), is offering 1-2 postdoctoral positions in multimodal MRI. Post-doctoral positions will be supported by several newly funded NIH projects examining brain network organization across the lifespan in autism spectrum disorders (ASD). Research at BDIL (www.sci.sdsu.edu/bdil) applies diffusion weighted imaging techniques (tensor-based, multi-fiber, multi-shell imaging), anatomical MRI, fMRI, functional connectivity MRI, MR spectroscopy as well as behavioral and neuropsychological measures to investigate the brain bases of ASD and age-related change across the lifespan (1-65 years). BDIL collaborates with experts in MR physics, radiology, EEG, MEG, and bioinformatics to implement innovative imaging and analysis techniques (e.g., simultaneous fMR/EEG recording, combined MEG and MRI). BDIL researchers have full access to the UCSD Center for Functional MRI (http://fmri.ucsd.edu/), with two 3T human research scanners (32 channel head coils), led by top experts in radiology physics. Applicants should have experience in multimodal MRI (data acquisition, preprocessing, analysis). Experience in other imaging modalities (EEG, MEG) will be relevant, but not indispensable. Applicants with experience in the study of autism or other developmental disorders may be preferred. Please e-mail CV, research statement, reprints, and 3 letters of recommendation to Ralph-Axel Müller at:rmueller@sdsu.edu. ================================ 3. UCL INSTITUTE OF NEUROLOGY Wellcome Trust Centre for Neuroimaging London, UK Research Associate / Senior Research Associate in MRI Physics A postdoctoral position for an expert in MRI physics is available within the Wellcome Trust Centre for Neuroimaging (WTCN), UCL Institute of Neurology, London, UK. The Centre conducts cutting-edge research by means of functional and structural brain imaging, and is equipped with three 3 T MRI scanners (Siemens Tim Trio with 32-ch head coil), an MEG system (CTF/VSM), and MR compatible EEG and TMS systems. One of the MRI systems is equipped with an optical tracking system for prospective motion correction (Kineticor). We are seeking a highly motivated individual to work within the physics group at the WTCN reporting to Prof. Nikolaus Weiskopf, Head of MRI Physics. The group specializes in the development of a broad range of methods, including diffusion, structural and functional imaging, based on understanding the underlying MR physics, to arrive at efficient solutions. Current projects include, but are not limited to, maximizing acquisition efficiency and resolution, artifacts correction including optical prospective motion correction and quantitative MRI (see http://www.fil.ion.ucl.ac.uk/Research/physics.html). As a member of the WTCN Physics Group, the post holder will be expected to support ongoing neuroscience research. The appointee will be engaged in his/her own research projects to improve and develop novel MRI acquisition methods related to the primary projects of the group. Particular emphasis will be placed on fMRI acquisition methods with very high temporal and spatial resolution, to enable unprecedented studies of connectivity and functional microstructure. Applicants must have a PhD or, if not already held (Research Associate applicants only) the PhD must have been obtained by the agreed start-date in physics, biomedical engineering, or a comparable subject. A strong background in MR physics is essential, as is expertise in programming high-level languages (e.g. C/C++, Matlab). Applicants must also be specialized in at least one (Research Associate) or two (Senior Research Associate) of the following areas: pulse sequence programming, Siemens MR scanners and software (IDEA, ICE), MR image reconstruction methods (in particular, parallel imaging and compressed sensing), assessing safety of equipment / implants in the MR environment, time-series analysis, functional MRI or SPM software. Those applying for the Senior Research Associate position will also need to be able to demonstrate an established publication track record and experience of leading a team of researchers. The post is available immediately and is funded by the Wellcome Trust until November 2017, in the first instance. Salary will be in the range of £33,353 - £40,313 pa on UCL Grade 7 (Research Associate) or £41,430-£48,873 pa on UCL Grade 8 (Senior Research Associate) including London Allowance and superannuable. You should apply for this post through UCL's online recruitment http://www.ucl.ac.uk/hr/jobs where you can download a job description and person specification using ref: 1485072. If you have any queries regarding the application process, please contact Samantha Robinson, Personnel Officer, Institute of Neurology, 23 Queen Square, London, WC1N 3BG (email: IoN.HRAdmin(a)ucl.ac.uk <mailto:IoN.HRAdmin@ucl.ac.uk>). *Informal enquiries to Prof Nikolaus Weiskopf (email: **n.weiskopf(a)ucl.ac.uk <mailto:n.weiskopf@ucl.ac.uk>**)*. Further information on the lab: *http://www.fil.ion.ucl.ac.uk/Research/physics.html* ** *Closing date: *20 September 2015 /UCL Taking Action for Equality/ ________________________________ Dr. Martina Callaghan Deputy Head of Physics & Senior Research Associate Wellcome Trust Centre for Neuroimaging Institute of Neurology University College London 12 Queen Square London WC1N 3BG UK Tel: +44-20-344-84383 (internal ext 84383) Email: m.callaghan(a)ucl.ac.uk <mailto:m.callaghan@ucl.ac.uk> ====================================== 4. A new postdoctoral opportunity has arisen here in Cardiff, at the new Cardiff University Brain Research Imaging Centre (CUBRIC -http://sites.cardiff.ac.uk/cubric ). The is is a chance for a smart microstructural imager to get their hands on Cardiff's new 300 mT/m Connectome and 7T systems (seehttp://sites.cardiff.ac.uk/cubric/facilities/mri ) and get involved in an interesting modeling project focused on delivery of drugs / cells. The ad has just been posted here: http://www.ismrm.org/jobs/j05565.pdf and linked here: http://www.ismrm.org/career-center/postdoctoral-positions/ Please drop me a line with any informal enquiries. Thanks for reading! Derek Jones =============================== 5. University of Connecticut College of Liberal Arts and Sciences Postdoctoral Fellow in Cognitive Neuroscience The University of Connecticut’s new Brain Imaging Research Center (BIRC) invites The BIRC is a 3,200 square foot, research-dedicated imaging facility housing a research-dedicated 3T Siemens Prisma scanner and simultaneous high-density EEG/ERP, with a major focus of cognitive neuroscience research. The Postdoctoral Fellow will contribute to multiple funded NIH studies of language processing, reading, word acquisition, and cognition, under PIs Dr. Jay Rueckl and Dr. Peter Molfese. Prior experience in research using MRI/fMRI is required. Responsibilities will include the design and execution of fMRI and behavioral experiments; fMRI data analysis; formulating and participating in writing of scientific papers as part of the research team; participating in grant writing towards the eventual goal of independent funding; and developing independent projects in the areas of speech, reading, and language. Minimum Qualifications: · Ph.D. in Psychology, Cognitive Neuroscience, or Related Field · Experience with fMRI Experimental Design · Experience with MRI/fMRI Data Analysis (e.g. AFNI, FSL, SPM, Freesurfer) Preferred Qualifications: · Strong Analytical & Statistical Skills (e.g. SEM, HLM, Data Mining) · Experience with EEG/ERP Data Collection and Analysis · Programming Skills (e.g. C/C++, Python, R, E-PRIME) · Experience with Computational Modeling The anticipated start date is September 1, 2015, but is negotiable. Salary will be commensurate with qualifications and experience. Interested applicants should send a cover letter describing qualifications, a CV, and any supporting materials to UConn Careers (www.jobs.uconn.edu). Select “Apply Now" to be redirected to Academic Jobs Online to complete your application. Names of three references should be included in the cover letter; letters will be submitted to Academic Jobs Online. Inquiries can be addressed to Peter Molfese, Chair o Screening of applications will begin immediately and continue until the position is filled. The University of Connecticut is an EEO/AA employer. https://academicjobsonline.org/ajo/jobs/5759 =============================== 6. Applications are invited for two Post-Doctoral positions in the Brain and Language Lab (www.brainandlanguagelab.org <http://www.brainandlanguagelab.org>) at the University of Geneva.The positions are for 2.5 years, and will be at the new Biotech Campus (http://www.campusbiotech.ch/en/). 1. For the first position, candidates should have a degree in Cognitive Neuroscience, Biomedical Engineering, Computational Neuroscience or a related field, and should have solid experience in brain imaging data analysis, computational modelling, pattern recognition, machine learning, statistics and programming. The projects will involve the use and development of computational morphometry and of computational modeling to study auditory cortex structure and function in healthy individuals, in experts and in individuals with dyslexia. 2. For the second position, candidates should have a background in Psychology and/or Cognitive Neuroscience, and should have solid experience in functional and structural brain imaging data analysis. The projects will include brain imaging and behavioural studies on multilingualism and expertise, with a focus on executive skills and statistical learning. The salary is competitive, starting salary at 68, 964 CHF/year or more depending on experience. The positions are available immediately, and applications will be considered until the position is filled.Informal inquiries can be addressed to Narly Golestani (Narly.Golestani(a)unige.ch).Applications including a CV, a statement of research interests, and the names and full contact details of three referees should be sent to: Narly.Golestani(a)unige.ch <mailto:Narly.Golestani@unige.ch>. =====================

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YNiC seminar 3rd September
by Rebecca E Millman 31 Aug '15

31 Aug '15

Dear Users This Thursday (4-5 pm in B020), Katja Weibert will give an internal project proposal presentation on "Do patterns of response in face-selective regions represent facial identity?". Everyone is welcome to attend. Refreshments will be available after the seminar. Best wishes Rebecca -- Dr. Rebecca E. Millman York Neuroimaging Centre The Biocentre York Science Park York YO10 5DG Email: rem(a)ynic.york.ac.uk Tel: 01904 435 5373

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phds/jobs
by Gary Green 24 Aug '15

24 Aug '15

1. he Faculty of Psychology, Department of Experimental and Applied Sciences, Research Group of Biological Psychology of the Vrije Universiteit Brussel (VUB) seeks a highly motivated candidate for a PhD position on a project on the impact of different sub-processes in emotion regulation within the recovery of stressful events on sleep and neural correlates. The aim of the project is to disentangle emotion regulation in its sub-processes and assess their respective effectiveness on the behavioral and on the neurophysiological level. Profile: The candidate must have a research master in the behavioral sciences, bio-medical sciences, or affective- and cognitive (neuro-) science, or related areas. Excellent English communication and writing skills are required. Methodological and statistical competence and coding experience such as matlab or python, experience with experimental research, psychophysiological methods, and/or neuro-imaging techniques is considered as advantageous. The position requires enrollment in the PhD-program of the Faculty of Psychology and Educational Sciences. The research will be done in collaboration with Prof. Daniele Marinazzo, Prof. Monica Dhar and other experts in the field. Interested candidates can apply by email, providing a motivation letter, full curriculum vitae, including all university study results, and the names and contact information of at least two references. The deadline for application is August 25, 2015. Interested? For additional information you can contact: Prof. Marie Vandekerckhove: Marie.Vandekerckhove(a)vub.ac.be =============== 2. Post-Doc position in multisensory neuroimaging (MEG/EEG) studies at the Centre for Cognitive Neuroimaging, Glasgow, UK The post is advertised in the context of the EU-funded ERC project "Understanding the neural mechanisms of multisensory perception based on computational principles". The integrative neuroscience laboratory is dedicated to understanding the integration of multisensory information in the brain. The planned studies use state of the art imaging methodology (MEG, and possibly fMRI or EEG) combined with quantitative data analysis to better understand when and how the brain combines different sensory channels to inform perception. Further details about our research can be found on our website (http://inl.ccni.gla.ac.uk/). The project is based in a vibrant research environment and leading neuroimaging facility (http://www.ccni.gla.ac.uk/). The job requires all aspects of study design, implementation, data collection, data analysis as well as assisting in the supervision of junior lab members, presenting at conferences and participating in the writing up of the results. Applicants should have (or expect to receive in the near future) a PhD in neuroscience, cognitive science, psychology, mathematics, computer science or another relevant discipline. We are especially interested in devotion to advanced quantitative data analysis including the capabilities to program or modify analysis code and the ideal applicant will have a strong analytical background and direct experience using MATLAB software. Experience with neuroimaging would be an advantage. Any applicant should have enthusiasm, and a clear, demonstrable capacity for acquiring expertise in these techniques. This position is funded for up to 4 years from November 2015, at UK RA Salary Grade 7 (£33,242 – £37,394 per annum). Please apply online at www.glasgow.ac.uk/jobs, reference Nr 011135 Closing date: 13th September 2015 Questions may be directed to the PI: Christoph.Kayser(a)glasgow.ac.uk. =========================== 3. Post-doctoral position, Cincinnati, Ohio USA We invite applications for a post-doctoral research position in Neurology at Cincinnati Children’s Hospital Medical Center (CCHMC). The successful applicant will contribute to ongoing MEG studies of pediatric language and epilepsy. This is a two-year position focused in one or more of the following areas: · Methods for multimodal neuroimaging, with a focus on integration of fMRI and MEG data · Source-space connectivity techniques, designed to overcome challenges related to leakage, impact of inverse solution, etc. · Validation of integrated imaging and analysis protocols for mapping language in children undergoing epilepsy surgery (MEG, fMRI, EEG, ECoG, stimulation mapping, pathology, and outcome data available) The post-doctoral fellow will regularly interact with clinical and research faculty, other post-docs, graduate students, and research staff in the Divisions of Neurology and Radiology, the Pediatric Neuroimaging Research Consortium (PNRC) and the Imaging Research Center (IRC). He/she is expected to contribute to our regular research discussions, and to present at research meetings within CCHMC and at major conferences (e.g., BIOMAG, OHBM). The successful candidate will have completed their PhD in biomedical or electrical engineering, physics, computer science, psychology, neuroscience, or a related discipline. He/she will have experience in collection and analysis of electrophysiological data, expertise in signal processing, with strong programming skills (MATLAB or a similar computing environment). The ideal candidate would also have prior experience in neuroimaging and a solid background in neuroanatomy, and familiarity with M/EEG analysis software (e.g., Brainstorm, Brainwave, BESA, FieldTrip/SPM, MNE). All qualified recent graduates, or those nearing completion of their PhD, are encouraged to apply. CCHMC is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, age, genetic information, physical or mental disability, military or veteran status, sexual orientation, or other protected status in accordance with applicable federal, state, and local laws and regulations. Applicants should submit a cover letter and current CV (including a list of scholarly publications), along with the names and contact information for three referees to: Darren S. Kadis, PhD Assistant Professor, Division of Neurology Pediatric Neuroimaging Research Consortium Cincinnati Children's Hospital Medical Center c/o Kimra Smith Kimra.Smith(a)cchmc.org Review of applications will begin immediately. We anticipate a start date in the fall, 2015. ============================= 4. The Neuroimaging Research Core at the Marcus Autism Center in the Department of Pediatrics at Emory University, in collaboration with the Biomedical Imaging Technology Center in the Department of Biomedical Engineering at Emory University/Georgia Tech, is offering a full time position as Postdoctoral Research Fellow /Research Associate. The Neuroimaging Research Core at Marcus is currently conducting two large-scale MRI studies: The first longitudinal study is to understand the typical brain development in infants from 0 to 6 months as well as the impact of autism spectrum disorders (ASD) to the early brain development. The second one involves the study of brain development in school-aged children, with the focus on the developmental unfolding of ASD and its relationship with the subjective perception of stimulus salience. The Biomedical Imaging Technology Center is a research center of the Wallace H. Coulter Department of Biomedical Engineering, a joint department of Georgia Tech and Emory University specializing in the technical development of MRI. The Marcus Autism Center is a not-for-profit organization dedicated to the diagnosis and treatment of children with Autism Spectrum Disorders (ASD). It is the country’s largest center for clinical care of children and adolescents with ASD, with more than 5,000 unique children and their families served each year. The Center is also one of the national hubs of science in the field of developmental disabilities, designated by NIH as an Autism Center of Excellence. Applicants should have a Ph.D. degree in Biomedical Engineering, MR physics, Computer Sciences, Neuroscience, Psychology or related fields, as well as research experience in MRI image analyses. Prior experience with diffusion MRI is especially preferred. Experience with MRI analysis software packages (i.e., FSL, AFNI for diffusion and functional MRI data analyses) and computer programming skills (MATLAB, C/C++ & Bash scripts) are required. The applicant will be expected to i) develop computational and statistics methods to analyze neuroimaging data (especially structural and diffusion MRI data) from infants and school-aged children; ii) design and implement novel dedicated equipment for optimizing data collection from infants and children; iii) participate in acquiring neuroimaging data; iv) prepare manuscripts and extramural grants, and (v) collaborate with MRI physicists, social neuroscientists, engineers, and clinicians. The position-holder will be co-mentored by and closely collaborate with Drs. Longchuan Li (Marcus Autism Center & Biomedical Imaging Technology Center), Xiaoping Hu (Director of Biomedical Imaging Technology Center), Sarah Shultz (Co-Director of Neuroimaging Core at Marcus Autism Center) and Warren Jones (Director of Social Neuroscience Lab at Marcus Autism Center). The position is available immediately and the initial appointment is for one year. Renewal is expected if progress is satisfactory. Emory University School of Medicine offers competitive benefits and salary package and has been ranked high as one of the “Best Places to Work for Postdocs”. Interested candidates should email to Dr. Longchuan Li (lli36(a)emory.edu), with a cover letter and CV. Qualified candidates will be asked to have 3 letters of reference forwarded to Dr. Li. ====================== 5. A postdoctoral position is available with Dr. Katherine Karlsgodt in the Cognitive and Clinical Neuroscience Group, part of the Zucker Hillside Hospital and NorthShore-LIJ Psychiatry Research Division and the Feinstein Institute for Medical Research. The focus of the group is on developmental psychopathology, in particular, in the development of functional and structural connectivity in adolescents with psychotic and mood disorders. We are particularly interested in researchers who have a strong interest in and history of research in neurodevelopment and/or psychosis. The ideal candidate will have demonstrated skills in neuroimaging, particularly diffusion tensor imaging (DTI), task based functional MRI (fMRI), and resting state fMRI. The start date is flexible, from August-September 2015 onwards. The Zucker Hillside Hospital is located in Queens, New York and has a long history of research in schizophrenia and related disorders. For more details, interested applicants should email a CV and a brief description of research interests and experience to Katherine Karlsgodt, at kkarlsgodt(a)nshs.edu. ========================== 6. Postdoctoral Fellowship at Duke-National University of Singapore Multimodal Neuroimaging in Neuropsychiatric Disorders Laboratory, Center for Cognitive Neuroscience at Duke-NUS Graduate Medical School, National University of Singapore is looking for postdoctoral fellow in cognitive neuroscience and/or multimodal neuroimaging. Our group studies the human neural bases of social-emotion, cognition, and memory functions and the associated vulnerability patterns in neuropsychiatric disorders, including neurodegenerative diseases (focusing on AD, FTD and preclinical stages) and Schizophrenia. Multimodal neuroimaging and psychophysical techniques are employed, including magnetic resonance imaging (MRI), functional MRI, diffusion tensor imaging, and electroencephalography (EEG). We are interested in developing computational methods to examine the network-level structural and functional brain connectivity to shed light on the neurobiological mechanism of disease, paving the way for early detection and intervention. Candidates must have a passionate enthusiasm for research, a strong background in one of the following fields: computational neuroscience, cognitive neuroscience, neuropsychiatric disorders, neuroimaging analyses, mathematics/statistics/machine learning or related-fields. He/she should also possess the ability to take the initiative, work independently and be motivated to work in a highly collaborative and international research environment, and be able to demonstrate creativity, technical independence and excellent communication skills. Strong interest in studying dynamic functional connectivity and its relationships with cognition and disease would be a plus. Proven skills in fMRI/EEG/DTI data analyses is a plus but not necessary. Key attractions are access to a 3T Prisma MR scanner and a MR compatible digital EEG system as well as collaboration opportunities with an excellent network of domestic and international scientists and doctors. The position will be two years with possible extension. Competitive package will be provided based on experience. Interested applicants are welcome to email Assistant Prof. Helen Juan Zhou at helen.zhou(a)duke-nus.edu.sg with application letter, curriculum vitae, three references, and contact information. Website: https://sites.google.com/site/mneuroimaginglab/; http://www.duke-nus.edu.sg/content/zhou-juan-helen ======================== --

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