- ynic-users

by Antony Morland

Hello All, At a recent Research Governance Committee Meeting it was agreed to inform the users of the facilities at YNiC of the opportunity to undertake and online course on Diversity in the Workplace. The course can be found at the following URL. http://www.york.ac.uk/admin/hr/training/pod/courses/statutory/diversity/inde x.htm Best wishes Tony

15 years, 10 months

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YNiC Closure

by Sam Johnson

Hello all, As you are hopefully already aware YNiC is closing as of 5 p.m. this Friday, the 21st, for two weeks. This is just a reminder that between the evening of the 21st and 9 a.m. on the 7th of September, YNiC will effectively be shut down whilst we make some fairly major changes to the IT infrastructure, not the least of which is the replacement of the computers in open plan. Hopefully this will be a smooth process for everyone using the center, and will provide a greater range of software and analysis tools. Unlike previous closures where most of the changes have been behind the scenes, this year you will definitely notice the difference as both the hardware and operating systems will be changing. While this will inevitably take a little bit of getting used to, there will be change over documentation, and the new systems will provide a much more flexible environment for your analysis. There will be one or two interruptions to the YNiC website, notably for a couple of hours on the evenings of the 21st and 24th. Any other interruptions should be very brief. A seperate notice will be sent out by Paul regarding the psychology mail server. Thanks, -- Sam Johnson York NeuroImaging Centre http://www.ynic.york.ac.uk

15 years, 10 months

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YNiC power off

by Mark Hymers

Dear all, As you may know, due to complications with the availability of parts, the planned power-down at the Biocentre last month did not occur. Due to this, on Wednesday 29th July at 6pm, the power to the Biocentre will be temporarily cut off. We will therefore have to shut down all YNiC services including the desktops, cluster, servers, web servers and so on. YNiC will therefore close at 1700 to allow staff time to shut all services down in a clean manner. We also suggest that people refrain from submitting jobs to the cluster on Wednesday afternoon as any which are on the cluster when we have to shutdown will be cancelled. We anticipate that power will return at about 9pm. A seperate notice will be sent out by Paul regarding the psychology mail server. Thanks, Mark -- Mark Hymers York Neuroimaging Centre

15 years, 11 months

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There will be tours of YNiC today at 14.00, 14.45 and 15.30.

by Michael Simpson

Dear all, Just to let you know that there will be groups of 6th form visitors on tours of YNiC today, between 2pm and 4pm. During this time, Open Plan in particular will be especially busy. However, computer availability will not be affected. These tours are part of the university Open Day. Michael -- Dr Michael Simpson Science Liaison Officer York Neuroimaging Centre Innovation Way York YO10 5DG Tel: 01904 567614 Web: http://www.ynic.york.ac.uk

15 years, 12 months

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Cancellation of electrical work

by Mark Hymers

Dear all, The electrical work at the Biocentre has been cancelled due to the relevant part not arriving in time. This means that neither psycmail.york.ac.uk or the YNiC systems will be down this evening but that there will be an outage in the future (the timing is yet to be decided and will be sent around as soon as possible). Sorry about the late change, Mark -- Mark Hymers York Neuroimaging Centre

16 years

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YNiC power off

by Mark Hymers

Dear all, On Thursday evening at 6pm, the power to the Biocentre will be temporarily cut off. Due to this, we'll have to shut down all YNiC services including the desktops, cluster, servers, web servers and so on. YNiC will therefore close at 1700 to allow staff time to shut all services down in a clean manner. We also suggest that people refrain from submitting jobs to the cluster on Thursday afternoon as any which are on the cluster when we have to shutdown will be cancelled. We anticipate that power will return at about 9pm. A seperate notice will be sent out about the psychology mail server. Sorry about the short notice, Mark -- Mark Hymers York Neuroimaging Centre

16 years

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YNiC seminar 2nd July

by rem

Dear Users This week Tim Andrews will give a talk on "The representation of facial identity in visual cortex" from 4-5 pm in YNiC open plan. Everyone is welcome to attend. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years

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Building work at YNiC

by am501＠psych.york.ac.uk

Hello All, Some minor building work will be undertaken at YniC from tomorrow onwards. We are having the work done to configure the centre appropriately for the IT upgrades in August. We have been assured that it will not be disruptive, but it is possible that some unforeseen disturbance may occur. I am sorry if you are affected by the work, which should be completed over the next two weeks. Tony

16 years

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YNiC closure 21/8/09 - 7/9/09

by am501＠psych.york.ac.uk

Dear all, As you may be aware, YNiC will be undergoing an extensive updating of its computing facilities over the summer. This large-scale project will require a full closure of the centre for two weeks. In order to allow the MSc students to complete their work, we have scheduled the work to commence immediately after the MSc project deadline (21st August). YNiC will therefore be completely closed to users from 17:00 on Friday 21st August until 09:00 on Monday 7th September. We hope you understand that this time will allow us to perform the necessary work to update and imporove the facilities at YNiC. [***** Please note that this will not directly affect the Psychology mail server (although a short outage period of a couple of hours may be necessary over one of the weekends - this will be arranged and announced nearer the time). *****] Many Thanks, Tony

16 years

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YNiC seminar 25th June

by rem

Dear Users This Thursday (4-5 pm) in YNiC open plan, there will be a presentation on a "work in progress" MEG project. This project is being carried out by Rebecca Millman and Philip Quinlan. The title of the talk is "The temporal envelope of speech is represented on multiple time scales". Everyone is welcome to attend. Best wishes Rebecca Abstract: "The aim of this study was to determine the auditory cortical mechanisms that form the basis of representing the temporal envelope of speech in humans. The Asymmetric Sampling in Time (AST) model [e.g., Poeppel, D. (2003). The analysis of speech in different temporal integration windows: cerebral lateralization as “asymmetric sampling in time”, Speech Commun. 41: 245-255] proposes that speech perception involves multiple representations of the speech signal on at least two time scales. The AST model posits that the representation of speech is asymmetrical in the time domain as the left auditory areas preferentially integrate information from short (~20-40 ms) temporal windows whilst the right hemisphere homologues preferentially extract information from long (~150-250/300 ms) integration windows. Poeppel and colleagues, (e.g., Poeppel, 2003), suggest that temporal integration is reflected as oscillatory neuronal activity in at least two different frequency bands (theta, gamma). The AST model (e.g., Poeppel, 2003) hypothesises that the hemispheric lateralisation of speech processing results from speech driving gamma activity in the left hemisphere and theta activity in the right hemisphere. Magnetoencephalography (MEG) was used to determine whether changes in power in the canonical electrophysiological frequency bands (delta, theta, alpha, beta, gamma and high gamma) are used to represent speech processing. The speech stimuli were noise-vocoded single words. The attentional state (non-attend vs. attend) of the participants was manipulated. MEG beamformers were used to filter the data into the canonical frequency bands and localise the brain areas involved in processing the speech stimuli on the basis of these frequency bands. The results suggest that 1) the speech temporal envelope is represented on multiple time scales, 2) these time scales are commensurate with the canonical frequency bands corresponding to delta, theta and gamma activity, and 3) the attentional state of the participant modulates the spatiotemporal representation of the speech temporal envelope." -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years

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YNiC seminar today

by rem

Tony Morland will give a talk on "fMRI evidence for abnormal thalamo-cortical connections in a blindsight patient" from 4-5 pm in YNiC open plan. Everyone is welcome to attend. -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years

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YNiC seminar 18th June

by rem

Dear Users This week Tony Morland will give a talk on "fMRI evidence for abnormal thalamo-cortical connections in a blindsight patient" from 4-5 pm in YNiC open plan. Everyone is welcome to attend. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years

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no YNiC seminar this week

by rem

Dear Users There will not be a YNiC seminar this Thursday (11th June) as it is the undergraduate Leaving Day. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years

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Today in YNiC

by Gary Green

Dear Users This afternoon the Vice-Chancellor will be visiting YNiC. He will be showing the Chief Executive of HEFCE around the scanners and open plan area. They will arrive at about 3pm and leave at 3.45. If you are going to be working in YNiC today it would help us a lot if you could endeavour to be in YNiC during that time. We will ask people in the open plan to be prepared to say something about their work as I am sure the VC will select someone as he has done so on other visits. In MEG Andre will be demonstrating responses to visual stimuli and Mark Hymers, Michael Cowley and Simon Duckett will be demonstrating hyperpolarisation in MRI thanks Gary -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. +44 (0) 1904 435349 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004

16 years, 1 month

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Today's seminar cancelled

by Gary Green

I apologise but I will not be able to give the seminar today as I have to attend a meeting elsewhere -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. +44 (0) 1904 435349 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004

16 years, 1 month

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YNiC seminar 4th June

by rem

Dear Users This week Gary Green will give a talk on "Statistics for Neuroimaging" from 4-5 pm in YNiC open plan. Gary will talk about the different types of statistics that can be used for neuroimaging experiments. The aim of this talk is to open up a discussion about which statistical methods we should use in the context of statistical contrasts of experimental conditions. Everyone is welcome to attend. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years, 1 month

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YNiC seminar postponed

by rem

Dear Users There will be no YNiC seminar today as Gary can't be here. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years, 1 month

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Research Fellow position in Institute of Psychological Sciences, University of Leeds

by Ekaterini Klepousniotou

Dear colleagues, Please find attached the advertisement for a Post-doctoral Research Fellow position in the EEG lab in the Institute of Psychological Sciences, University of Leeds, UK. Please encourage any of your students who are eligible to apply. All the best, Katerina **************************************************************** Dr. Ekaterini Klepousniotou Lecturer in Cognitive Neuroscience & Neuropsychology Institute of Psychological Sciences University of Leeds Leeds LS2 9JT UK Tel: +44 (0)113 3435716 Fax: +44 (0)113 3435749

16 years, 1 month

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external speaker TODAY

by rem

Dear Users Today Suresh Muthukumaraswamy from the Cardiff University Brain Research Imaging Centre (CUBRIC) will be giving a talk on "Gamma oscillations in human visual cortex: Function, physiology and relationship to BOLD" from 4-5 pm in YNiC open plan. Everyone is welcome to attend. Best wishes Rebecca Here is Suresh's web page: http://www.cardiff.ac.uk/psych/contactsandpeople/researchstaff/muthukumaras… and here is the abstract for his talk: "I review a number of studies conducted at CUBRIC using magnetoencephalography to investigate gamma oscillations (> 30 Hz) in human visual cortex. Firstly we demonstrate that gamma band responses are sensitive to a number of bottom-up stimulus parameters including spatial and temporal frequency, colour, contrast, motion and stimulus type. Studies comparing both BOLD and gamma are then considered. These data demonstrate that while BOLD and gamma responses demonstrate considerable spatial coincidence they are markedly different in their response across parametrically varied stimulus dimensions. This functional decoupling implies that gamma band oscillations as recorded by MEG are not sufficient to generate a BOLD response and that MEG can be sensitive to certain stimulus parameters that BOLD is not. Gamma band responses in individuals can be shown to be quite variable in terms of frequency and amplitude across individuals but that these effects are highly repeatable across recording sessions. Our data also demonstrate how this variability in gamma band responses and BOLD can be accounted for by measuring GABA concentration with magnetic resonance spectroscopy." -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years, 1 month

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Mental Capacity Act

by Gary Green

Dear Users From time to time PIs and users will wish to carry out non-invasive imaging research on individuals who may have a condition, or have limited cognitive ability, that makes it difficult for them to understand questions, respond appropriately or in their own best interests. The Mental Capacity Act which was put into practice in 2007 seeks to provide protection for such individuals. We are required to take actions to ensure that we comply with this act in the interests not only of the individual but also of the research worker or staff assist with that research. A list of the 12 things that you need to know about the act can be read at http://www.sabp.nhs.uk/serviceusers-carers/MentalCapacityAct A very useful document, prepared by the BPS, "Conducting research with people not having the capacity to consent to their participation - a practical guide for researchers" can be found here http://www.bps.org.uk/downloadfile.cfm?file_uuid=AC678329-1143-DFD0-7E20-4E… -- Gary Green Director York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk tel. +44 (0) 1904 435349 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004

16 years, 1 month

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YNiC seminar 21st May: External speaker

by rem

Dear Users This week Suresh Muthukumaraswamy from the Cardiff University Brain Research Imaging Centre (CUBRIC) will be giving a talk on "Gamma oscillations in human visual cortex: Function, physiology and relationship to BOLD" from 4-5 pm in YNiC open plan. Everyone is welcome to attend. Best wishes Rebecca Here is Suresh's web page: http://www.cardiff.ac.uk/psych/contactsandpeople/researchstaff/muthukumaras… and here is the abstract for his talk: "I review a number of studies conducted at CUBRIC using magnetoencephalography to investigate gamma oscillations (> 30 Hz) in human visual cortex. Firstly we demonstrate that gamma band responses are sensitive to a number of bottom-up stimulus parameters including spatial and temporal frequency, colour, contrast, motion and stimulus type. Studies comparing both BOLD and gamma are then considered. These data demonstrate that while BOLD and gamma responses demonstrate considerable spatial coincidence they are markedly different in their response across parametrically varied stimulus dimensions. This functional decoupling implies that gamma band oscillations as recorded by MEG are not sufficient to generate a BOLD response and that MEG can be sensitive to certain stimulus parameters that BOLD is not. Gamma band responses in individuals can be shown to be quite variable in terms of frequency and amplitude across individuals but that these effects are highly repeatable across recording sessions. Our data also demonstrate how this variability in gamma band responses and BOLD can be accounted for by measuring GABA concentration with magnetic resonance spectroscopy." -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years, 1 month

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RE: Bernstein meeting ynic-users Digest, Vol 34, Issue 5

by Datta, Avijit

The website indicates that abstract submission deadline for the Bernstein meeting has been extended to may 31st Dr. Avijit Datta MD MRCP Consultant Respiratory Physician Hon. Clinical Reader York Hospital Foundation Trust YORK, YO31 8HE United Kingdom Tel: +44 904 725839 Fax: +44 904 726338 -----Original Message----- From: ynic-users-request(a)ynic.york.ac.uk [mailto:ynic-users-request@ynic.york.ac.uk] Sent: 14 May 2009 12:00 To: ynic-users(a)ynic.york.ac.uk Subject: ynic-users Digest, Vol 34, Issue 5 Send ynic-users mailing list submissions to ynic-users(a)ynic.york.ac.uk To subscribe or unsubscribe via the World Wide Web, visit https://www.ynic.york.ac.uk/mailman/listinfo/ynic-users or, via email, send a message with subject or body 'help' to ynic-users-request(a)ynic.york.ac.uk You can reach the person managing the list at ynic-users-owner(a)ynic.york.ac.uk When replying, please edit your Subject line so it is more specific than "Re: Contents of ynic-users digest..." Today's Topics: 1. [Fwd:Bernstein Conference on Computational Neuroscience (BCCN*2009) (abstract submission open)] (Gary Green) ---------------------------------------------------------------------- Message: 1 Date: Thu, 14 May 2009 08:10:21 +0100 From: Gary Green <gary.green(a)ynic.york.ac.uk> Subject: [Fwd:Bernstein Conference on Computational Neuroscience (BCCN*2009) (abstract submission open)] To: ynic-users(a)ynic.york.ac.uk Message-ID: <4A0BC3DD.6030606(a)ynic.york.ac.uk> Content-Type: text/plain; charset="iso-8859-1" Bernstein Conference on Computational Neuroscience (BCCN*2009) http://bccn2009.org/ We would like to announce that abstract submission to the BCCN 2009 is now open. Abstract submission closes: 17 May 2009 at 23:59 UTC. We expect high-level contributions and are looking forward to an excellent single-track program with interesting talks and posters about current research in Computational Neuroscience and Neurotechnology. Confirmed invited speakers are: Jozsef Fiser (Brandeis) Wulfram Gerstner (EPFL) Amiram Grinvald (Weizmann) Gilles Laurent (Caltech) Klaus Obermayer (BCCN Berlin) Mriganka Sur (MIT) About the conference: The Bernstein Conference on Computational Neuroscience (BCCN) strives to be the major European Conference on Computational Neuroscience and Neurotechnology. It has grown out of the annual Symposium of the German National Bernstein Network for Computational Neuroscience, which has been held since 2005. Now in its 5th year, organized by the Frankfurt Institute for Advanced Studies (FIAS), it has been opened as an international conference. We expect around 300 international participants from the areas of Cognitive Science, Neuroscience, Computer Science, Physics, Machine Learning, Mathematics, Engineering and related fields. Selected abstracts will be published in the journal Frontiers in Computational Neuroscience. Best posters, talks, and demonstrations will be awarded with a total sum of 1500 Euros (supported by the Deutsche Telekom Laboratories). The meeting is open for contributions from all relevant areas of computational neuroscience including, but not limited to: learning and plasticity, sensory processing, motor control, reward system, brain computer interface, neural encoding and decoding, decision making, information processing in neurons and networks, dynamical systems and recurrent networks, and neurotechnology. This year's meeting will have an emphasis on all aspects of vision. MAIN MEETING: 30 September - 2 October, 2009 Goethe University Frankfurt am Main, Germany PHD STUDENT-SYMPOSIUM: 3 October, 2009 Frankfurt Institute for Advanced Studies Frankfurt am Main, Germany IMPORTANT DATES: Abstract submission opened: 4 May 2009 Abstract submission deadline: 17 May 2009 Demonstration proposals deadline: 15 June 2009 Notification of acceptance: 13 July 2009 Early registration closes: 15 August 2009 ORGANIZING COMMITTEE: General Chair: Jochen Triesch Program Chairs: Jorg Lucke, Gordon Pipa, Constantin Rothkopf Demonstrations Chair: Cornelius Weber Publications Chair: Junmei Zhu Finance Chair: Cornelius Weber Publicity Chair: Prashant Joshi PhD Student-Symposium Chair: Cristina Savin Local Arrangements Chair: Gaby Schmitz IT Support: Alex Achenbach, Marc Henniges, Thomas Weisswange We are looking forward to welcoming you in Frankfurt!

16 years, 1 month

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[Fwd: YNiC Today

by Gary Green

Dear Users This week (4-5 pm in YNiC open plan) there will be a talk on hyperpolarisation given by Gary Green and Simon Duckett. Everyone is welcome to attend. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years, 1 month

1
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[Fwd:Bernstein Conference on Computational Neuroscience (BCCN*2009) (abstract submission open)]

by Gary Green

Bernstein Conference on Computational Neuroscience (BCCN*2009) http://bccn2009.org/ We would like to announce that abstract submission to the BCCN 2009 is now open. Abstract submission closes: 17 May 2009 at 23:59 UTC. We expect high-level contributions and are looking forward to an excellent single-track program with interesting talks and posters about current research in Computational Neuroscience and Neurotechnology. Confirmed invited speakers are: Jozsef Fiser (Brandeis) Wulfram Gerstner (EPFL) Amiram Grinvald (Weizmann) Gilles Laurent (Caltech) Klaus Obermayer (BCCN Berlin) Mriganka Sur (MIT) About the conference: The Bernstein Conference on Computational Neuroscience (BCCN) strives to be the major European Conference on Computational Neuroscience and Neurotechnology. It has grown out of the annual Symposium of the German National Bernstein Network for Computational Neuroscience, which has been held since 2005. Now in its 5th year, organized by the Frankfurt Institute for Advanced Studies (FIAS), it has been opened as an international conference. We expect around 300 international participants from the areas of Cognitive Science, Neuroscience, Computer Science, Physics, Machine Learning, Mathematics, Engineering and related fields. Selected abstracts will be published in the journal Frontiers in Computational Neuroscience. Best posters, talks, and demonstrations will be awarded with a total sum of 1500 Euros (supported by the Deutsche Telekom Laboratories). The meeting is open for contributions from all relevant areas of computational neuroscience including, but not limited to: learning and plasticity, sensory processing, motor control, reward system, brain computer interface, neural encoding and decoding, decision making, information processing in neurons and networks, dynamical systems and recurrent networks, and neurotechnology. This year's meeting will have an emphasis on all aspects of vision. MAIN MEETING: 30 September - 2 October, 2009 Goethe University Frankfurt am Main, Germany PHD STUDENT-SYMPOSIUM: 3 October, 2009 Frankfurt Institute for Advanced Studies Frankfurt am Main, Germany IMPORTANT DATES: Abstract submission opened: 4 May 2009 Abstract submission deadline: 17 May 2009 Demonstration proposals deadline: 15 June 2009 Notification of acceptance: 13 July 2009 Early registration closes: 15 August 2009 ORGANIZING COMMITTEE: General Chair: Jochen Triesch Program Chairs: Jorg Lucke, Gordon Pipa, Constantin Rothkopf Demonstrations Chair: Cornelius Weber Publications Chair: Junmei Zhu Finance Chair: Cornelius Weber Publicity Chair: Prashant Joshi PhD Student-Symposium Chair: Cristina Savin Local Arrangements Chair: Gaby Schmitz IT Support: Alex Achenbach, Marc Henniges, Thomas Weisswange We are looking forward to welcoming you in Frankfurt!

16 years, 1 month

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YNiC seminar 14th May

by rem

Dear Users This week (4-5 pm in YNiC open plan) there will be a talk on hyperpolarisation given by Gary Green and Simon Duckett. Everyone is welcome to attend. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

16 years, 1 month

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