Dear Colleagues
Computing Service have asked us to take our machines down for a period
of three hours on Wednesday evening. This will allow us to take
advantage of a change in the University network architecture and will
provide more resilience in our connections to the University.
Please can everyone stop submitting cluster jobs that will not be
complete by 5pm on Wednesday. To be on the safe side I would suggest not
submitting jobs after 3pm on Wednesday. Even then jobs may be lost if
they are still running at 5.
During the downtime, mail and web services will also be interrupted but
for a shorter period.
Thanks
--
Gary Green
York Neuroimaging Centre
The Biocentre
York Science Park
Innovation Way
Heslington
York
YO10 5DG
http://www.ynic.york.ac.uk
tel. 01904 435349
fax 01904 435356
mobile 07986 778954
Hello all,
As I'm sure many of you will know there's a fairly large contingent of
YNiC users and staff heading off to Barcelona in a couple of weeks for
the annual 4D users meeting. This will be a very hard working trip (with
not a hint of tapas or sangria, no siree) but does mean that for at
least some of the week beginning 14th of July there will be very limited
support available at YNiC. Some of the staff will be returning towards
the end of the week but for the 14th to 16th at least, YNiC will be
running with little more than a skeleton staff.
We apologise for the inconvenience this may cause, but the 4D meetings
have been very useful in the past and we hope will be so again this
year. If you have any issues that you think may come up over that week
you may well be advised to let us know as soon as possible so we can
resolve them ahead of time, or put them off till the following week.
Hopefully the disruption will be minimal, and worth the ideas and
developments we'll bring back.
Thanks,
Sam
Richard Wise, from Imperial College London, will be giving the Thursday
evening seminar on the 26th
entitled:
"So why hasn't functional imaging told us how we recover communication
after an aphasic stroke"
There will be the usual selection of refreshments afterwards and as
always, all are welcome.
The seminar will be held in YNiC at 4.30pm (note the change in time)
We will be taking Richard out to dinner afterwards. Do contact me if you
would like to join us,
--
Gary Green
York Neuroimaging Centre
The Biocentre
York Science Park
Innovation Way
Heslington
York
YO10 5DG
http://www.ynic.york.ac.uk
tel. 01904 435349
fax 01904 435356
mobile 07986 778954
Dear All,
Alex Wade, from the Smith-Kettlewell Eye Research Institute and previously
Stanford, will be giving a seminar at 16:30 tomorrow (24th June) in C003,
Psychology.
He will be talking about recent neuroimaging work on the human visual visual.
Refreshments will be available after the talk.
All welcome
Cheers
Tony
Hello again,
Thanks to all who pointed out my deliberate mistake in nicely clashing
next Thursday's seminar with an important, whole faculty psychology
meeting. Oops.
I'm just checking that there are no problems in moving the seminar back
a bit to allow people to get across to YNiC, and once I've confirmed
that I'll send another email with a slightly revised time.
In the mean time, thanks again to those who let me know, and watch this
space,
Yours abashedly,
Sam
>Delivered-To: psychology.york.ac.uk-A.Ellis(a)PSYCH.YORK.AC.UK
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>From: Eleanor Maguire <e.maguire(a)FIL.ION.UCL.AC.UK>
>Organization: FIL
>Subject: two post-doc vacancies (Maguire Memory Lab) at the FIL in London
>To: COGNEURO(a)JISCMAIL.AC.UK
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>***************************************************************
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>Replies to this e-mail will be directed to ALL
>members of the list.
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>
>Dear All
>
>I have two vacancies for post-doctoral
>researchers in my Lab at the WellcomeTrust
>Centre for Neuroimaging (the 'FIL'), Institute
>of Neurology, University College London. I
>wonder if you would be kind enough to bring
>these vacancies to the attention of anyone you
>think might be interested.
>
>Many thanks
>
>Eleanor Maguire
>
>
>Vacancy1:
>***Post-doctoral Research Associate: fMRI of Memory and Imagination
>
>*A Wellcome Trust funded Post-doctoral Research
>Associateship is available under the supervision
>of Professor Eleanor Maguire. The appointee will
>play a key role in researching the neural basis
>of episodic/autobiographical memory, scene
>construction and imagination using functional
>MRI and neuropsychological assessment of
>patients with memory impairments. This is an
>exciting opportunity to contribute to a
>fast-developing field seeking to understand the
>relationship between recalling the past,
>imagining the future and other cognitive
>functions. The appointee will benefit from
>interactions with a critical mass of cognitive
>neuroscience researchers, methodologists and
>technologists at the Centre that contribute to
>an excellent environment for conducting the
>highest quality research. Applicants should have
>a PhD in psychology, cognitive neuroscience or a
>related discipline. They should have research
>experience within the broad project area, of
>programming with Matlab, and of designing,
>executing and analysing experiments using
>functional MRI. They should be able to
>demonstrate a consistently outstanding academic
>record, including publications. Excellent
>organisational and communication skills, and the
>ability to work both independently and as part
>of a team, are also required. This post is
>available from 1^st October 2008 and is funded
>for three years. Starting salary on the UCL
>Grade 7 scale in the range £30,939 - £33,561 pa
>inclusive, superannuable. Further details
>should first be obtained from Miss Katy Brinded,
>Personnel Officer, Institute of Neurology, Queen
>Square, London WC1N 3BG (tel: 020 7676 2191;
>email: personnel(a)ion.ucl.ac.uk
><mailto:personnel@ion.ucl.ac.uk>). Informal
>enquiries welcome to:
>e.maguire(a)fil.ion.ucl.ac.uk
><mailto:e.maguire@fil.ion.ucl.ac.uk>. *Closing
>date for applications:
>**Thursday 31^st July, 2008.*
>
>
>Vacancy 2:
>*Post-doctoral Research Associate: Decoding Memories from fMRI Signals
>
>*A Wellcome Trust funded Post-doctoral Research
>Associateship is available under the supervision
>of Professor Eleanor Maguire. The appointee will
>play a key role in researching spatial and
>episodic memory using multivariate analysis of
>high spatial resolution functional MRI data.
>Application of decoding techniques to the human
>hippocampus and related brain areas offers an
>exciting new avenue for exploring how memories
>are coded by the neurons of the brain. The
>appointee will benefit from interactions with a
>critical mass of cognitive neuroscience
>researchers, methodologists and technologists at
>the Centre that contribute to an excellent
>environment for conducting the highest quality
>research. Applicants should have a PhD in
>computer science, mathematics, physics,
>cognitive neuroscience or a related discipline.
>They should have advanced skills in programming
>(e.g. Matlab, C++) combined with experience of
>or an interest in applying these skills to
>biological questions relating to human memory.
>Experience of analysing fMRI data, and of
>machine learning/multivariate analysis
>techniques is also highly desirable. Applicants
>should be able to demonstrate a consistently
>outstanding academic record, including
>publications. Excellent organisational and
>communication skills, and the ability to work
>both independently and as part of a team, are
>also required. This post is available from 1^st
>October 2008 and is funded for three years.
>Starting salary on the UCL Grade 7 scale in the
>range £30,939 - £36,429 pa inclusive,
>superannuable. Further details should first be
>obtained from Miss Katy Brinded, Personnel
>Officer, Institute of Neurology, Queen Square,
>London WC1N 3BG (tel: 020 7676 2191; email:
>personnel(a)ion.ucl.ac.uk
><mailto:personnel@ion.ucl.ac.uk>). Informal
>enquiries welcome to:
>e.maguire(a)fil.ion.ucl.ac.uk
><mailto:e.maguire@fil.ion.ucl.ac.uk>*. Closing
>date for applications:
>**Thursday 31^st July, 2008.*
>**
>
>
>
>/UCL Taking Action for Equality/
>
>
>---------------------------------------------
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--
Professor Andy Ellis
Department of Psychology
University of York
York YO10 5DD
England
Tel. +44 (0)1904 433140
http://www.york.ac.uk/depts/psych/www/people/biogs/awe1.html
Hello All,
Richard Wise will be giving the Thursday evening seminar on the 26th
(next week), entitled:
"So why hasn't functional imaging told us how we recover communication
after an aphasic stroke"
There will be the usual selection of refreshments afterwards and as
always, all are welcome.
There is no seminar this afternoon.
Thanks,
Sam
Dear All,
Please be aware that when you submit bookings for scanning there is a limit
of 7 hours per week per scanner for your project. Also note, that requests
for bookings after 4pm may not be possible to arrange because it involves
additional radiographer cover.
Thanks
Tony
Antony Morland PhD
Deputy Director York Neuroimaging Centre
Professor of Visual Neuroscience
Department of Psychology
University of York
York YO10 5DD
UK
Tel +44 (0) 1904 432 860
Email a.morland(a)psychology.york.ac.uk
Dear All,
I just wanted to pass on some advice with regard to accessing the MRI
corridor, when you are about to scan participants. I am communicating
this information because over recent days, quite consistently,
investigators together with their participants have been milling around in
the MRI corridor in advance of their booked slot. I know that this
reflects enthusiasm and an effort on the investigators part to be well
prepared for their scan session and make good use of time. However, the
presence of people in the MRI corridor also runs the risk of disquieting
patients who have been scanned for health reasons. I want to try and
strike a balance between optimising the use of the scanner and maximising
privacy for patients and research participants, who change clothes in the
cubicles on the MRI corridor.
Heres the plan then:
(1) A maximum of two investigators, but preferably just one investigator,
may accompany the research participant into the MRI corridor.
(2) The investigator(s) can stay in the corridor only for the time it
takes to explain the procedure for changing into scrubs to the
participant.
(3) The investigator(s) must then enter the interview room and wait for
the participant to join them.
(4) The MRI operator with then come to the interview room to invite the
investigator(s) and participant through to the scanner suite. It is very
likely that a patient will be changing back into their clothes at this
time, so please keep conversation professional and to a minimum.
(5) If other investigators wish to join the scan session, they may do so
only at the discretion of the MRI operator, who will be able to determine
whether patients privacy will be compromised by the presence of addition
people and will be able to advise when investigators should leave to
ensure privacy is maintained.
If you find that the interview room has already been reserved,
participants may change into scrubs, but must return to and wait in
reception with the investigators until they are invited through to the
scanner suite by the MRI operator.
If investigators are found not to be conforming to this procedure, one of
their scan sessions will be used as a training session on how to prepare
participants for scanning.
Thanks for your help with this.
Tony
Hi,
As of today, there is a small change to the booking system for MEG and
MRI at YNiC. Whilst previously, bookings were made on 10-minute
intervals, in order to fit the clinical and research booking together
more easily, this has now changed, for future bookings, to 15-minute
intervals (i.e bookings start and end at 00, 15, 30 and 45 minutes past
the hour).
The bookings page (https://www.ynic.york.ac.uk/bookings/) has also been
changed to show the timings of existing bookings more clearly.
Thanks,
Mark
--
Mark Hymers
York Neuroimaging Centre
Hi,
Please be aware that the default behaviour of the beamformer has
changed as of 01/06/2008. An artifact has been identified which has now
been compensated for. As such, if you have run any beamforming studies
prior to 01/06/2008, it is vitally important that you familiarise
yourself with the issue of FilterPadding found at:
https://www.ynic.york.ac.uk/doc/FilterPadding
Any questions should be directed to analysis-support(a)ynic.york.ac.uk
Thanks,
Mark (on behalf of the YNiC Staff)
--
Mark Hymers
York Neuroimaging Centre
Dear Users
We have some visitors coming to YNiC on Wednesday 4th June from
4.30-7.30 pm. We will be talking to the visitors in Open Plan and they
will need access to at least half of the iMacs.
If you intend to work in Open Plan on Wednesday afternoon, please could
you move to a computer towards the back of the room (i.e. away from the
projector) as we approach 4.30 pm.
Thank you
Rebecca
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
Dear colleagues
On Tuesday the 3rd of June from 2pm onwards, YNiC will be reviewed by
the University. A committee will be investigating how we operate,
talking to users & staff and reviewing our space.
If you are thinking of working at YNiC that day, it would help us to
have users in the open plan area in case the Committee Members wish to
talk about User experiences/research. Of course I cannot guarantee that
they will want to do this as we have only been sent a general outline
about what they wish to cover in the two and half hour visitation
Thanks
Gary
--
Gary Green
York Neuroimaging Centre
The Biocentre
York Science Park
Innovation Way
Heslington
York
YO10 5DG
http://www.ynic.york.ac.uk
tel. 01904 435349
fax 01904 435356
mobile 07986 778954
Jonathan Peirce will be speaking from 4-5 pm at YNiC on "PsychoPy -
Psychology and neuroscience stimuli in python".
http://www.nottingham.ac.uk/neuroscience/contact/a-z/M-R/peirce_jon.phtml
Everyone is welcome to attend and there will be wine and soft drinks
available after the talk.
Best wishes
Rebecca
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
Dear Users
Next week's seminar (Thursday 4 pm at YNiC) will be given by Jonathan
Peirce from the University of Nottingham.
http://www.nottingham.ac.uk/neuroscience/contact/a-z/M-R/peirce_jon.phtml
The title of his talk will be "PsychoPy - Psychology and neuroscience
stimuli in python".
Tim Andrews will be hosting this visit.
Everyone is welcome to attend and there will be wine and soft drinks
available after the talk.
Best wishes
Rebecca
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
Dear Users
The 4-D Neuroimaging International Users' Group Meeting will be held
from 13th-15th July. YNiC has been asked to give a number of
presentations; one of which is a slot on the "sensory/cognitive
roundtable". This will be an excellent opportunity to present exciting
MEG results from the YNiC user community to the rest of the 4-D IUGM
delegates.
Last year three users allowed me to use their data in the presentation.
As each speaker at last year's roundtable was only given 6 minutes each
to present, I could only include a couple of slides from each user. I
envisage that the format will be similar this year and therefore I would
only need a couple of slides from any user who would like to share their
data.
Either Michael Simpson or I will be the YNiC representative on the
sensory/cognitive roundtable panel. For now please register any interest
in using your data in the roundtable with me.
Best wishes
Rebecca
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
I have agreed to collate information on publications and conference
presentations reporting YNiC work. The deadline is very tight.
Please could you send me ASAP a list of your own papers and
presentations, including forthcoming work. One or two papers 'in
preparation' would also be helpful.
Many thanks
Andy
--
Professor Andy Ellis
Department of Psychology
University of York
York YO10 5DD
England
Tel. +44 (0)1904 433140
http://www.york.ac.uk/depts/psych/www/people/biogs/awe1.html
Dear users
I have been asked to forward this :
------------
FMRI & EEG studies of neurovascular coupling
Cardiff University Brain Research Imaging Centre (CUBRIC)
School of Psychology
Post-doctoral Research Associate (Combined EEG-FMRI)
Applications are invited for an experienced neuroimaging researcher to
work on combined EEG-FMRI and quantitative FMRI techniques in humans. You
would work with the FMRI Director, Dr Richard Wise, to develop empirical
measures of neurovascular coupling in humans. This is important in the
long term development of FMRI as a technique for examining changes in
brain activity induced by pharmacological agents and neurological disease.
The successful applicant would design, implement and analyze combined
EEG-FMRI studies with the aim of exploring the relationship between
electrophysiological and haemodynamic signals for both sensory-evoked and
ongoing (resting) brain activity. An important component of the project
lies in relating FMRI signals to physiological measurements from
volunteers. (e.g. breathing, cardiac cycle). Respiratory challenges (e.g.
breathing tasks) and pharmacological challenges in collaboration with
clinical colleagues would also be used to modify the baseline physiology
of participants in experiments. Candidates should have a PhD in a relevant
area of neuroimaging and be experienced in the analysis of FMRI data.
The post is fixed-term for 2 years with a salary up to £33780 (grade 6).
Informal enquiries should be made to Dr Richard Wise, CUBRIC, School of
Psychology, Cardiff University, Park Place, Cardiff, UK, CF10 3AT.
(http://www.cardiff.ac.uk/psych/cubric/).
Telephone: +44 (0)29 2087 0358
Email: WiseRG(a)cardiff.ac.uk .
Applications should be made through the Cardiff University website:
http://www.cardiff.ac.uk/jobs/academic/index.htmlhttp://www.cardiff.ac.uk/jobs/academic/20080298-290508.html
Vacancy ref: 2008/0298
The closing date for applications is Friday 29 May 2008.
Richard Wise
FMRI Director
CUBRIC
School of Psychology
University of Cardiff
Park Place
Cardiff
CF10 3AT
Tel: +44 (0)29 2087 0358 (direct) 0365 (reception)
Fax: +44 (0)29 2087 0339
--
Gary Green
York Neuroimaging Centre
The Biocentre
York Science Park
Innovation Way
Heslington
York
YO10 5DG
http://www.ynic.york.ac.uk
tel. 01904 435349
fax 01904 435356
mobile 07986 778954
Ekaterini Klepousniotou will be speaking from 4-5 pm at YNiC on "The
When and Where of Lexical Ambiguity Processing: Evidence from EEG and
fMRI ".
http://www.psyc.leeds.ac.uk/people/ekaterini/index.htm
Everyone is welcome to attend and there will be wine and soft drinks
available after the talk.
Best wishes
Rebecca
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
Dear all,
given that at least 2 members of YNiC staff had failed to remember that
there is an ASC today, I thought it would do no harm to send a another
reminder.
So, 4pm today, Psychology B020, see the email sent to ynic-users
yesterday for the agenda.
Michael
--
Dr Michael Simpson
Science Liaison Officer
York Neuroimaging Centre
Innovation Way
York
YO10 5DG
Tel: 01904 567614
Web: http://www.ynic.york.ac.uk
Dear all,
Piers has forwarded to me the following agenda for the YNiC ASC
tomorrow, Wednesday 14th May. Just to remind you, this will take place
in Psychology room B020 at 4pm.
Michael
--
Dear all,
We have just finished some preliminary analyses of MEG data collected
from a fast phonological priming task (e.g. brane priming BRAIN, versus
brone priming BRAIN) that I would like to report and discuss.
The reason for doing the experiment, as many of you know, is that I have
wanted to get some clearer insight into the role of the very early
activation we have seen across a number of experiments, in left post.
sup. IFG and adjacent precentral gyrus during visual word recognition tasks.
Initial results from the group analysis of beamformed images within
experimental conditions were very encouraging - a real yippee moment.
However, once we started analysing virtual electrode data to compare
directly between experimental conditions, things become a bit more
prickly. While we currently have some results which I think are
convincing, I would really like to discuss the issues that have been
raised especially regarding the group comparisons of Stockwell
transforms, such as:
a) For comparisons of Stockwell plots at the group level should we
compare differences or percentage signal change between conditions?
b) How should we handle the (in our case) quite marked inter-subject
variability?
c) Should we consider some kind of normalisation between pairs of
conditions prior to statistical analysis?
We would really appreciate your thoughts on these and other questions,
and your opinions about how best to proceed,
Best
Piers C
--
Dr Michael Simpson
Science Liaison Officer
York Neuroimaging Centre
Innovation Way
York
YO10 5DG
Tel: 01904 567614
Web: http://www.ynic.york.ac.uk
Dear Users
This week's seminar (Thursday at 4 pm in YNiC) will be given by
Ekaterini Klepousniotou from the University of Leeds.
http://www.psyc.leeds.ac.uk/people/ekaterini/index.htm
The title of the talk will be "The When and Where of Lexical Ambiguity
Processing: Evidence from EEG and fMRI".
Everyone is welcome to attend and there will be wine and soft drinks
available after the talk.
Best wishes
Rebecca
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
Dear all,
As promised last term, I am planning to give a practical session at
YNiC on Thursday the 15th at 10AM. I will review the FSL procedures
for analyzing data and I will show you how to obtain optimal
schedules for event related designs.
I am sending this to YNiC users in case someone else is interested
or in case someone is planning to have a quite time in the open plan
that morning.
Silvia
Silvia Gennari
Department of Psychology
University of York
York, YO10 5DD
United Kingdom
Matthew Brett will be speaking from 4-5 pm at YNiC on "Finding and using
regions of interest". Wine and soft drinks will be available afterwards.
http://www.mrc-cbu.cam.ac.uk/people/matthew.brett/
--
************************************************************************
Dr. Rebecca E. Millman
Science Liaison Officer
York Neuroimaging Centre
The Biocentre
York Science Park
Heslington
YO10 5DG
Tel: +44 (0) 1904 567614
Fax: +44 (0) 1904 435356
Hello all,
As one or two of you may have noticed we've been continuing the ongoing
push to improve the documentation in the centre, the latest step of
which is a workflow document that will hopefully ease the passage of all
projects here at YNiC. This is essentially a route finder to what we
think will be the most relevant help and assistance you need depending
on the stage of your project, along with any vital information for the
work you are currently doing. It includes sections from the first
approach an investigator might make to the centre, through to writing up
your study. Some sections are more verbose than others, but we hope
we've got the balance right between the information you need (and where
to get more details), and a easily digestible amount of information at
any one time.
At present there are a few paper handouts on the long benches in Open
Plan. If they disappear we'll take that as a good sign and make
arrangements for a more permanent supply, otherwise this documentation,
along with updated induction and safety guides, can be found on the
website at:
https://www.ynic.york.ac.uk/guides/
Here you'll find both web-based and downloadable pdf versions available.
As ever, we hope we've covered the key points, but welcome any and all
suggestions for improvements. Please send your comments to:
support(a)ynic.york.ac.uk
Although we hope to have stable versions as soon as possible, if you're
looking at paper or pdf versions you've downloaded, it's always a good
idea to check you have the most recent version (as indicated in the top
left hand corner date stamp).
Thanks,
Sam
--
Sam Johnson
Science Manager, York NeuroImaging Centre
University of York
http://www.ynic.york.ac.uk
