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some useful papers on resting state
by Gary Green 02 Jun '10

02 Jun '10

The current edition of Frontiers in Systems Neuroscience http://frontiersin.org/neuroscience/systemsneuroscience/ has a set of useful papers on resting state analyses and connectivity measures -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk https://www.ynic.york.ac.uk/about-us/people/ggrg tel. +44 (0) 1904 435349 PA (Claire Fox) +44 (0) 1904 435329 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004

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[Fwd: [SPM] Postdoctoral Position: TMS & FMRI]
by Gary Green 02 Jun '10

02 Jun '10

FYI ======================= I will shortly be advertising for a 3-year Postdoctoral Position at the newly opened Centre for Integrative Neuroscience & Neurodynamics, University of Reading. The project will entail using TMS and/or FMRI to test models of cortical-subcortical connectivity in cognition-emotion interaction. We will be looking for candidates with a strong analytic and technical skills as well as a PhD in a relevant discipline. Proficiency with the English language is also required. If you are interested in the position, I will be at the Human Brain Mapping conference next week. If you will be there, please email me to arrange a meeting, or if you are presenting a poster, let me know the details so that I can drop by. If not at HBM, please feel free to drop me an email. The official announcement for the position will be in a few weeks, with a starting date this summer or early autumn. Dr. Tom Johnstone Centre for Integrative Neuroscience & Neurodynamics School of Psychology and CLS University of Reading i.t.johnstone(a)reading.ac.uk http://www.reading.ac.uk/cinn

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Equipment in ynic
by Gary Green 01 Jun '10

01 Jun '10

Please can I make something very clear. No equipment should be taken from meg or mri under any circumstances. To do so puts other peoples' projects at risk and could also affect calibration issues. If people need to use equipment such as that housed in meg or mri, then they should discuss their needs directly with the user support manager, Andre Gouws, or myself. But to repeat myself , I will not give permission for any equipment to be removed Gary Green

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YNiC seminar 3rd June
by rem 01 Jun '10

01 Jun '10

Dear Users This week Shane Lindsay will give a project proposal talk at 4 pm in YNiC open plan on "Encoding effects for novel and existing words". This is a proposal for an fMRI experiment which will look at the initial encoding of novel and existing words to see how brain activity, particularly in the medial temporal lobes, will predict subsequent recognition and recollection outside the scanner Everyone is welcome to attend. Best wishes Rebecca -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

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[Fwd: International Summerschool on Multimodal Integration]
by Gary Green 28 May '10

28 May '10

FYI Dear colleague, Thomas Knösche and I organize the 5th International Summer School in Biomedical Engineering on "Multimodal integration of functional brain measurements" The summer school will be held August 18-25, 2010, in Wittenberg/Germany (UNESCO World Heritage Site). For more information, please see our website: http://www.tu-ilmenau.de/fakia/Summerschool-2010.summerschool-20090.0.html I would be happy if you could distribute this call within your institute and forward it to interested colleagues. Best wishes, Jens Haueisen p.s. Please excuse me for any accidental double postings. -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk https://www.ynic.york.ac.uk/about-us/people/ggrg tel. +44 (0) 1904 435349 PA (Claire Fox) +44 (0) 1904 435329 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004

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[Fwd: summer studentship in Cambridge]
by Gary Green 27 May '10

27 May '10

-------- Original Message -------- Subject: summer studentship in Cambridge Date: Thu, 27 May 2010 17:05:42 +0100 From: Bob Carlyon <bob.carlyon(a)MRC-CBU.CAM.AC.UK> Reply-To: bob.carlyon(a)mrc-cbu.cam.ac.uk Organization: Medical Research Council To: EAR-MAIL(a)JISCMAIL.AC.UK Dear all, I'd appreciate it if you could alert any suitable & interested students to this opportunity: *MRC Cognition and Brain Sciences Unit – Cambridge* *Student Vacation Placement: Electrophysiological and behavioural studies of human hearing* * * The MRC Cognition and Brain Sciences Unit (CBSU) is an internationally renowned research institute with state-of-the-art cognitive neuroscience facilities, including 3T-fMRI (Siemens), EEG, access to neuropsychological patient panels, and an MEG facility (Elekta Neuromag). * * We are able to offer one student vacation placement to undertake a project of research under the guidance of Dr Bob Carlyon. The experiment will involve studies of human hearing, and will include both behavioural experiments and studies of auditory brainstem and cortical activity, using evoked potentials measured from scalp electrodes. The successful candidate will be trained in the appropriate techniques and will have the opportunity to contribute to the design and analysis of the experiments. This placement will be for an 8 week period between mid June until mid September – the exact timing will be agreed in advance with the supervisor. You will have, or be in the process of obtaining a degree in psychology or a related discipline, and show a keen interest in obtaining research experience. Previous experience in conducting behavioural experiments would be useful, but full training will be given. The stipend, which is funded by the Wellcome Trust, will be £200 per week. On site car and bicycle parking is available. Applications should be sent, preferably by email, to Joe Worth, joseph.worth(a)mrc-cbu.cam.ac.uk <mailto:joseph.worth@mrc-cbu.cam.ac.uk>, or alternatively by posting to 15 Chaucer Road, Cambridge, CB2 7EF. Please include a cover letter and current CV when applying. Closing date: 9^th June 2010 -- Dr. Bob Carlyon MRC Cognition & Brain Sciences Unit 15 Chaucer Rd Cambridge CB2 7EF England Tel: +44 1223 355294 Fax: +44 1223 359062 www.mrc-cbu.cam.ac.uk/hearing -- Gary Green York Neuroimaging Centre The Biocentre York Science Park Innovation Way Heslington York YO10 5DG http://www.ynic.york.ac.uk https://www.ynic.york.ac.uk/about-us/people/ggrg tel. +44 (0) 1904 435349 PA (Claire Fox) +44 (0) 1904 435329 fax +44 (0) 1904 435356 mobile +44 (0) 788 191 3004

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YNiC seminar today
by rem 27 May '10

27 May '10

This afternoon David Crewther will give a project proposal talk at 4 pm in YNiC open plan entitled "Nonlinearities in Multi-focal Magnetoencephalography" Abstract Multi-focal visual evoked potentials have become a standard tool in the diagnosis of glaucoma and retinal vascular disease. However, the randomization techniques employed to de-correlate sequences for stimulation of patches of visual field also offer the opportunity for analysis of non-linearities in evoked responses. These have been used to derive separate magnocellular and parvocellular contributions to the cortical VEP. Here we propose to develop similar m-sequence based pseudo-random stimulation techniques to MEG with the purpose of localizing the time-course of activation of the M and P pathways as they extend into dorsal and ventral cortical streams. A beam-former approach to this question will be followed, answering questions regarding the role of the “magnocellular advantage” in object recognition. An initial 13 patch cortically scaled m-sequence multi-focal stimulus has been developed. Extensions to higher resolution cortical imaging are proposed. However multi-focal fMRI imaging indicates eye-movement control is vital. Hence a gaze-contingent system using retinally-stabilized presentation is being developed that will allow an estimate of the optimal high resolution MEG mapping of visual cortex. All welcome *YNIC 5th Birthday drinks will be held immediately after the seminar* -- ************************************************************************ Dr. Rebecca E. Millman Science Liaison Officer York Neuroimaging Centre The Biocentre York Science Park Heslington YO10 5DG Tel: +44 (0) 1904 567614 Fax: +44 (0) 1904 435356

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[Fwd: [visionlist] CINN Summer School, University of Reading, UK]
by Tim Andrews 26 May '10

26 May '10

This summer school may be of interest to some of you... -------- Original Message -------- Subject: [visionlist] CINN Summer School, University of Reading, UK Date: Tue, 25 May 2010 13:02:47 +0100 From: Etienne B. Roesch <etienne.roesch(a)gmail.com> To: connectionists(a)cs.cmu.edu, SPM(a)JISCMAIL.AC.UK, nesy(a)city.ac.uk, eucogii-general-news(a)googlegroups.com, PSYCH-POSTGRADS(a)JISCMAIL.AC.UK, pgwtpsych(a)JISCMAIL.AC.UK, cvnet(a)mail.ewind.com, ccnc-info(a)psych.Colorado.EDU, visionlist <visionlist(a)visionscience.com>, COGPSY(a)LISTSERV.TAMU.EDU [Apologies for cross-posting..] Dear colleagues, We are pleased to announce the second edition of the CINN Summer School. The summer school is directed at graduate students and postdoctoral fellows from psychology, linguistics, neuroscience, computational neuroscience, mathematics, computer sciences and engineering, who wish to combine a theoretical approach to neurodynamics with practical experience in neuroimaging (MRI, EEG, TMS, fMRI-EEG, & EEG-TMS). We are very excited to announce a guest tutorial by Prof. Walter Freeman, and practical demonstrations of combined fMRI-EEG and combined EEG-TMS by Brain Products (http://www.brainproducts.com). More will soon be posted here: http://www.reading.ac.uk/cinn/cinn-summerschool.aspx Objective A successful approach to cognitive neuroscience and neurodynamics requires knowledge of both modelling and neuroimaging techniques. The objective of the CINN Summer School is to bridge the gaps between these fields, and to provide students with a practical understanding of both the brain and some of the cutting-edge methods to investigate it. Programme The summer school is organised from the 7th to the 16th of July. It will start with a 2-day course delivered in partnership with Brain Products (http://www.brainproducts.com) on combined fMRI-EEG, and combined EEG-TMS, including theoretical lectures and practical demonstrations using the facilities in CINN. The third day will provide boot strap sessions aimed at bringing all students up to speed with basic concepts in cognition, cognitive neuroscience and mathematics. In the following week, students will be given the opportunity to attend a series of lectures and tutorials by some of the leading personalities in their fields, including a guest tutorial by Prof. Walter Freeman. Classes will touch upon the following themes: emotion, inverse models, language, neural synchrony, neurodynamics and non-linear dynamics. Detailed program to be announced soon. More on the practical fMRI-EEG and EEG-TMS demonstrations here: http://www.brainproducts.com/filedownload.php?path=workshops/WS_Reading_Pro… Registration Registration to the summer school is now open. Attendance is free. Participants will be selected on the basis of the expected gain from the summer school. Registration for practical demonstrations (fMRI-EEG, and EEG-TMS) is limited. Unfortunately, we will not be able to offer any grant for travel or accommodation. To apply, send to cinn(a)reading.ac.uk by 15th of June, midnight GMT: your curriculum vitae and a one-page pdf document describing a) your research interests, b) your experience in neuroscience, computational neuroscience and mathematics, and c) your motivation to apply and how the summer school could help you in your research. Applications will be reviewed by the steering committee, and students who have not been selected will be given the opportunity to enter a waiting list. Venue Classes will be hosted at the University of Reading. Practicals using MRI, EEG and TMS will be hosted in the Centre for Integrative Neuroscience and Neurodynamics (CINN). The CINN is an interdisciplinary research facility where cutting-edge research meets world-class facilities: a research-dedicated 3T Siemens Trio MRI scanner, MR-compatible EEG recording systems (Brain Products), and a MR-compatible TMS delivery system (Mag & More, and Brain Products). --- Dr. Etienne B. Roesch Centre for Integrative Neuroscience and Neurodynamics University of Reading, UK _______________________________________________ visionlist mailing list visionlist(a)visionscience.com http://visionscience.com/mailman/listinfo/visionlist -- Dr Tim Andrews Department of Psychology University of York York, YO10 5DD UK Tel: 44-1904-434356 Fax: 44-1904-433181 http://www-users.york.ac.uk/~ta505/

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YNiC IT systems at-risk period
by Mark Hymers 25 May '10

25 May '10

Hi, On Thursday 3rd June between 1000 and 1500, we will be having the YNiC Server Room UPS serviced. This means that there will be no backup power in the server room during this time. This should not cause any disruption except in the unlikely event of total power loss to the Biocentre during this time. Unfortunately this work is unavoidable and it is not practical to have it performed out of hours. In the event of a major failure during this time, we have plans to shut down the cluster and use auxiliary UPSes to bring core systems back online quickly. Thanks, Mark -- Mark Hymers York Neuroimaging Centre

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Small software update
by Mark Hymers 25 May '10

25 May '10

Hi, I've just pushed a patched fslview out to all of the YNiC machines (including remote desktop service). The only change in this version is that it now defaults[0] to saving masks which are created as .nii.gz (NIFTI files) instead of .hdr/.img pairs (ANALYZE format). This makes sense as the rest of FSL has deprecated ANALYZE support and it causes all sorts of trouble later on in the analysis stream. Thanks to Jodie for bringing this to my attention. Please let me know of any problems this causes or if you find any machines which didn't get the update. Cheers, Mark [0] Although I say "defaults to", you can't force a different file output type easily in the GUI as far as I can tell. If anyone needs to for some reason, the correct way to make fslview output ANALYZE is to run fslview from the command line having first set the FSLOUTPUTTYPE environment variable, i.e.: $ export FSLOUTPUTTYPE=ANALYZE $ fslview I've no idea why anyone would want to still be using ANALYZE, but thought it should be mentioned for the sake of completeness. This is also the same mechanism as applies for the rest of FSL, but it should be noted that ANALYZE support is now partial and I believe is slated for removal in a future release. -- Mark Hymers York Neuroimaging Centre

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